Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2577 and GFF2578 overlap by 4 nucleotides GFF2578 and GFF2579 are separated by 19 nucleotides GFF2579 and GFF2580 are separated by 69 nucleotides
GFF2577 - 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3), at 634,055 to 634,693
GFF2577
GFF2578 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 634,690 to 635,532
GFF2578
GFF2579 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 635,552 to 636,445
GFF2579
GFF2580 - L-aspartate oxidase (EC 1.4.3.16), at 636,515 to 638,101
GFF2580
Position (kb) 635
636
637 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 634.665 kb on + strand at 634.665 kb on + strand at 634.665 kb on + strand at 634.665 kb on + strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.666 kb on - strand at 634.686 kb on + strand at 634.686 kb on + strand at 634.686 kb on + strand at 634.686 kb on + strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.687 kb on - strand at 634.823 kb on + strand, within GFF2578 at 634.823 kb on + strand, within GFF2578 at 634.823 kb on + strand, within GFF2578 at 634.823 kb on + strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.824 kb on - strand, within GFF2578 at 634.873 kb on + strand, within GFF2578 at 634.874 kb on - strand, within GFF2578 at 634.874 kb on - strand, within GFF2578 at 634.874 kb on - strand, within GFF2578 at 634.973 kb on + strand, within GFF2578 at 634.974 kb on - strand, within GFF2578 at 635.090 kb on + strand, within GFF2578 at 635.090 kb on + strand, within GFF2578 at 635.090 kb on + strand, within GFF2578 at 635.090 kb on + strand, within GFF2578 at 635.090 kb on + strand, within GFF2578 at 635.091 kb on - strand, within GFF2578 at 635.091 kb on - strand, within GFF2578 at 635.091 kb on - strand, within GFF2578 at 635.091 kb on - strand, within GFF2578 at 635.091 kb on - strand, within GFF2578 at 635.334 kb on - strand, within GFF2578 at 635.334 kb on - strand, within GFF2578 at 635.334 kb on - strand, within GFF2578 at 635.334 kb on - strand, within GFF2578 at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.554 kb on - strand at 635.554 kb on - strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 636.084 kb on + strand, within GFF2579 at 636.084 kb on + strand, within GFF2579 at 636.085 kb on - strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.166 kb on - strand, within GFF2579 at 636.291 kb on + strand, within GFF2579 at 636.291 kb on + strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.399 kb on + strand at 636.696 kb on + strand, within GFF2580 at 636.696 kb on + strand, within GFF2580 at 636.696 kb on + strand, within GFF2580 at 636.697 kb on - strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 634,665 + -0.3 634,665 + -2.2 634,665 + +0.4 634,665 + -0.4 634,666 - -1.7 634,666 - -1.0 634,666 - -0.2 634,666 - -1.0 634,666 - -2.8 634,666 - -2.8 634,666 - -0.2 634,666 - +0.8 634,666 - +0.8 634,666 - -1.0 634,686 + -0.4 634,686 + +1.1 634,686 + -0.6 634,686 + -2.2 634,687 - -0.8 634,687 - +3.1 634,687 - +0.2 634,687 - +0.2 634,687 - +3.6 634,687 - -2.0 634,687 - -1.4 634,687 - +1.1 634,687 - -1.6 634,823 + GFF2578 0.16 +0.3 634,823 + GFF2578 0.16 -3.5 634,823 + GFF2578 0.16 +1.9 634,823 + GFF2578 0.16 -3.1 634,824 - GFF2578 0.16 +1.3 634,824 - GFF2578 0.16 +1.1 634,824 - GFF2578 0.16 -3.9 634,824 - GFF2578 0.16 +0.4 634,824 - GFF2578 0.16 +0.8 634,824 - GFF2578 0.16 +0.4 634,873 + GFF2578 0.22 -3.0 634,874 - GFF2578 0.22 -1.8 634,874 - GFF2578 0.22 -1.2 634,874 - GFF2578 0.22 +0.6 634,973 + GFF2578 0.34 -0.2 634,974 - GFF2578 0.34 +0.9 635,090 + GFF2578 0.47 +1.4 635,090 + GFF2578 0.47 -0.8 635,090 + GFF2578 0.47 +0.5 635,090 + GFF2578 0.47 +0.0 635,090 + GFF2578 0.47 -1.1 635,091 - GFF2578 0.48 -1.3 635,091 - GFF2578 0.48 -2.2 635,091 - GFF2578 0.48 -1.7 635,091 - GFF2578 0.48 -1.5 635,091 - GFF2578 0.48 -1.6 635,334 - GFF2578 0.76 -0.6 635,334 - GFF2578 0.76 -1.5 635,334 - GFF2578 0.76 -0.4 635,334 - GFF2578 0.76 -0.6 635,528 + +0.0 635,528 + +3.2 635,528 + -1.6 635,528 + +1.4 635,528 + -1.4 635,528 + +2.0 635,528 + -1.8 635,528 + -0.2 635,528 + -1.1 635,528 + -2.2 635,529 - -1.6 635,529 - -2.3 635,529 - +0.4 635,529 - +0.8 635,529 - +0.2 635,529 - -1.8 635,529 - +1.2 635,529 - -0.8 635,554 - +1.8 635,554 - +0.4 635,607 + +0.5 635,607 + +1.0 635,607 + -0.0 635,607 + -1.5 635,607 + -3.1 635,607 + -2.7 635,607 + +0.1 635,607 + -3.0 635,607 + -0.4 635,607 + -0.1 635,607 + -1.4 635,607 + -2.2 635,608 - -2.0 635,608 - -3.6 635,608 - -1.2 635,608 - -0.7 635,608 - +0.8 635,608 - +2.4 635,608 - -0.2 635,608 - +1.4 635,608 - -0.9 635,918 + GFF2579 0.41 -0.6 635,918 + GFF2579 0.41 +1.6 635,918 + GFF2579 0.41 +0.2 635,918 + GFF2579 0.41 -2.1 635,918 + GFF2579 0.41 -1.1 635,918 + GFF2579 0.41 -0.2 635,918 + GFF2579 0.41 -0.8 635,918 + GFF2579 0.41 -0.8 635,918 + GFF2579 0.41 +0.3 635,919 - GFF2579 0.41 -0.8 635,919 - GFF2579 0.41 +0.4 635,919 - GFF2579 0.41 +0.8 635,919 - GFF2579 0.41 -3.7 635,919 - GFF2579 0.41 +1.3 635,919 - GFF2579 0.41 +0.1 635,919 - GFF2579 0.41 +1.8 635,919 - GFF2579 0.41 -2.2 635,919 - GFF2579 0.41 +4.9 635,919 - GFF2579 0.41 -0.7 635,919 - GFF2579 0.41 +0.8 635,919 - GFF2579 0.41 +2.0 635,919 - GFF2579 0.41 -0.0 636,084 + GFF2579 0.60 -0.4 636,084 + GFF2579 0.60 +0.4 636,085 - GFF2579 0.60 +1.3 636,165 + GFF2579 0.69 +2.8 636,165 + GFF2579 0.69 +1.2 636,165 + GFF2579 0.69 +0.4 636,166 - GFF2579 0.69 -1.2 636,291 + GFF2579 0.83 +1.3 636,291 + GFF2579 0.83 -0.9 636,292 - GFF2579 0.83 -3.2 636,292 - GFF2579 0.83 +1.4 636,292 - GFF2579 0.83 -1.6 636,399 + +0.6 636,696 + GFF2580 0.11 -0.3 636,696 + GFF2580 0.11 +1.6 636,696 + GFF2580 0.11 +0.4 636,697 - GFF2580 0.11 +2.4 636,780 + GFF2580 0.17 +3.6 636,780 + GFF2580 0.17 +1.0 636,780 + GFF2580 0.17 -0.5 636,780 + GFF2580 0.17 +0.0 636,780 + GFF2580 0.17 -0.5 636,780 + GFF2580 0.17 +3.1 636,780 + GFF2580 0.17 -3.5 636,780 + GFF2580 0.17 +0.2 636,780 + GFF2580 0.17 -2.5 636,780 + GFF2580 0.17 -0.2 636,780 + GFF2580 0.17 +0.5 636,780 + GFF2580 0.17 +0.4 636,780 + GFF2580 0.17 +1.4 636,780 + GFF2580 0.17 +0.9 636,781 - GFF2580 0.17 +0.2 636,781 - GFF2580 0.17 -0.0 636,781 - GFF2580 0.17 -0.6 636,781 - GFF2580 0.17 -0.6 636,781 - GFF2580 0.17 -1.5 636,781 - GFF2580 0.17 +2.4 636,781 - GFF2580 0.17 +1.4 636,781 - GFF2580 0.17 -0.7 636,781 - GFF2580 0.17 -3.0 636,781 - GFF2580 0.17 -1.6 636,781 - GFF2580 0.17 -0.1 636,781 - GFF2580 0.17 +0.6 637,011 + GFF2580 0.31 +0.6 637,011 + GFF2580 0.31 -3.2 637,011 + GFF2580 0.31 +0.7 637,011 + GFF2580 0.31 -0.4 637,012 - GFF2580 0.31 -1.0 637,012 - GFF2580 0.31 +0.4 637,012 - GFF2580 0.31 +2.8 637,012 - GFF2580 0.31 -0.3 637,012 - GFF2580 0.31 -1.6 637,012 - GFF2580 0.31 -1.6 637,068 + GFF2580 0.35 -2.3 637,068 + GFF2580 0.35 -0.5 637,068 + GFF2580 0.35 +0.8 637,068 + GFF2580 0.35 -3.2 637,068 + GFF2580 0.35 +0.4 637,068 + GFF2580 0.35 -2.0 637,068 + GFF2580 0.35 -1.0 637,068 + GFF2580 0.35 -0.2 637,068 + GFF2580 0.35 -0.2 637,069 - GFF2580 0.35 -1.9 637,069 - GFF2580 0.35 +0.9 637,069 - GFF2580 0.35 -0.1 637,069 - GFF2580 0.35 -0.8 637,069 - GFF2580 0.35 -2.7 637,069 - GFF2580 0.35 +0.4 637,069 - GFF2580 0.35 -3.4 637,069 - GFF2580 0.35 +0.5 637,069 - GFF2580 0.35 -0.2 637,069 - GFF2580 0.35 -2.2 637,069 - GFF2580 0.35 -1.5 637,194 + GFF2580 0.43 -1.4 637,194 + GFF2580 0.43 -1.4 637,194 + GFF2580 0.43 -1.2 637,194 + GFF2580 0.43 +0.4 637,194 + GFF2580 0.43 +0.5 637,194 + GFF2580 0.43 -0.8 637,194 + GFF2580 0.43 +1.4 637,194 + GFF2580 0.43 +0.4 637,195 - GFF2580 0.43 +1.5 637,195 - GFF2580 0.43 +0.7 637,195 - GFF2580 0.43 -3.4 637,195 - GFF2580 0.43 +0.6 637,195 - GFF2580 0.43 -2.1 637,378 - GFF2580 0.54 -0.1 637,378 - GFF2580 0.54 +0.0 637,378 - GFF2580 0.54 +1.4 637,378 - GFF2580 0.54 -0.2 637,378 - GFF2580 0.54 -3.3
Or see this region's nucleotide sequence