Strain Fitness in Variovorax sp. SCN45 around GFF2505

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2503 and GFF2504 overlap by 4 nucleotidesGFF2504 and GFF2505 are separated by 30 nucleotidesGFF2505 and GFF2506 are separated by 1 nucleotides GFF2503 - DNA gyrase inhibitor YacG, at 564,965 to 565,174 GFF2503 GFF2504 - Cell division protein ZapD, at 565,171 to 565,926 GFF2504 GFF2505 - hypothetical protein, at 565,957 to 566,991 GFF2505 GFF2506 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 566,993 to 568,486 GFF2506 Position (kb) 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.966 kb on + strandat 564.967 kb on - strandat 565.090 kb on - strand, within GFF2503at 565.090 kb on - strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.388 kb on + strand, within GFF2504at 565.388 kb on + strand, within GFF2504at 565.389 kb on - strand, within GFF2504at 565.389 kb on - strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.428 kb on - strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.517 kb on + strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.706 kb on + strand, within GFF2504at 565.707 kb on - strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.811 kb on + strand, within GFF2504at 565.812 kb on - strand, within GFF2504at 565.812 kb on - strand, within GFF2504at 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.910 kb on + strandat 565.910 kb on + strandat 565.910 kb on + strandat 565.911 kb on - strandat 565.916 kb on + strandat 565.917 kb on - strandat 565.917 kb on - strandat 565.931 kb on - strandat 566.010 kb on + strandat 566.010 kb on + strandat 566.010 kb on + strandat 566.011 kb on - strandat 566.031 kb on - strandat 566.031 kb on - strandat 566.124 kb on + strand, within GFF2505at 566.125 kb on - strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.219 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.708 kb on + strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.742 kb on - strand, within GFF2505at 566.888 kb on + strandat 566.888 kb on + strandat 566.893 kb on + strandat 566.893 kb on + strandat 566.940 kb on - strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.022 kb on - strandat 567.022 kb on - strandat 567.022 kb on - strandat 567.058 kb on - strandat 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.382 kb on - strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.445 kb on - strand, within GFF2506at 567.445 kb on - strand, within GFF2506at 567.534 kb on + strand, within GFF2506at 567.534 kb on + strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.583 kb on - strand, within GFF2506at 567.583 kb on - strand, within GFF2506at 567.651 kb on + strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.738 kb on + strand, within GFF2506at 567.739 kb on - strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.752 kb on - strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.754 kb on - strand, within GFF2506at 567.778 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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564,963 - +0.1
564,963 - -0.2
564,963 - -1.0
564,963 - +0.2
564,963 - +0.1
564,963 - +0.0
564,966 + -0.4
564,967 - +0.1
565,090 - GFF2503 0.60 +0.8
565,090 - GFF2503 0.60 -1.5
565,107 + GFF2503 0.68 -1.3
565,107 + GFF2503 0.68 +1.9
565,107 + GFF2503 0.68 -0.9
565,107 + GFF2503 0.68 -0.8
565,107 + GFF2503 0.68 +2.1
565,107 + GFF2503 0.68 -2.0
565,107 + GFF2503 0.68 +0.2
565,107 + GFF2503 0.68 -1.2
565,107 + GFF2503 0.68 -3.2
565,108 - GFF2503 0.68 -1.3
565,108 - GFF2503 0.68 -1.8
565,108 - GFF2503 0.68 -0.8
565,108 - GFF2503 0.68 +1.5
565,108 - GFF2503 0.68 +0.4
565,108 - GFF2503 0.68 +0.2
565,108 - GFF2503 0.68 -1.7
565,108 - GFF2503 0.68 -2.0
565,108 - GFF2503 0.68 -1.3
565,388 + GFF2504 0.29 -1.3
565,388 + GFF2504 0.29 -1.3
565,389 - GFF2504 0.29 +0.5
565,389 - GFF2504 0.29 -1.0
565,427 + GFF2504 0.34 -0.4
565,427 + GFF2504 0.34 -2.6
565,427 + GFF2504 0.34 -2.1
565,427 + GFF2504 0.34 +2.8
565,428 - GFF2504 0.34 +1.7
565,514 + GFF2504 0.45 +1.9
565,514 + GFF2504 0.45 +0.7
565,514 + GFF2504 0.45 +0.8
565,514 + GFF2504 0.45 -2.6
565,514 + GFF2504 0.45 -2.4
565,514 + GFF2504 0.45 +1.0
565,515 - GFF2504 0.46 +0.8
565,515 - GFF2504 0.46 -1.1
565,515 - GFF2504 0.46 +0.5
565,515 - GFF2504 0.46 -1.0
565,515 - GFF2504 0.46 -1.1
565,515 - GFF2504 0.46 -0.9
565,515 - GFF2504 0.46 -0.2
565,515 - GFF2504 0.46 +3.4
565,515 - GFF2504 0.46 -3.2
565,517 + GFF2504 0.46 +2.3
565,518 - GFF2504 0.46 +0.4
565,518 - GFF2504 0.46 -2.6
565,518 - GFF2504 0.46 +0.1
565,706 + GFF2504 0.71 -0.5
565,707 - GFF2504 0.71 -1.3
565,747 + GFF2504 0.76 -1.7
565,747 + GFF2504 0.76 -0.3
565,747 + GFF2504 0.76 -0.2
565,748 - GFF2504 0.76 +0.5
565,748 - GFF2504 0.76 -1.1
565,748 - GFF2504 0.76 -0.9
565,811 + GFF2504 0.85 +1.2
565,812 - GFF2504 0.85 -1.7
565,812 - GFF2504 0.85 -0.6
565,883 + -1.4
565,883 + -2.4
565,883 + +0.4
565,883 + +1.8
565,883 + +0.4
565,884 - +2.4
565,884 - +1.1
565,884 - -1.0
565,884 - -0.0
565,884 - +0.0
565,884 - -0.0
565,884 - +0.5
565,884 - -0.6
565,884 - -2.9
565,884 - -2.8
565,910 + -1.1
565,910 + -1.3
565,910 + +2.3
565,911 - +1.2
565,916 + +1.2
565,917 - +1.8
565,917 - -0.2
565,931 - +3.2
566,010 + -2.5
566,010 + -0.9
566,010 + +0.8
566,011 - +0.4
566,031 - -1.2
566,031 - -1.9
566,124 + GFF2505 0.16 +1.6
566,125 - GFF2505 0.16 +1.7
566,177 + GFF2505 0.21 -0.1
566,177 + GFF2505 0.21 -1.0
566,177 + GFF2505 0.21 -0.8
566,219 + GFF2505 0.25 -2.3
566,438 + GFF2505 0.46 -0.3
566,438 + GFF2505 0.46 +3.2
566,439 - GFF2505 0.47 -2.0
566,439 - GFF2505 0.47 +0.8
566,708 + GFF2505 0.73 +0.0
566,709 - GFF2505 0.73 +0.6
566,709 - GFF2505 0.73 +0.7
566,709 - GFF2505 0.73 +1.3
566,709 - GFF2505 0.73 +0.0
566,709 - GFF2505 0.73 -1.1
566,709 - GFF2505 0.73 -0.9
566,709 - GFF2505 0.73 +0.4
566,709 - GFF2505 0.73 -0.7
566,709 - GFF2505 0.73 +2.5
566,709 - GFF2505 0.73 -0.4
566,742 - GFF2505 0.76 -0.5
566,888 + -2.0
566,888 + -3.7
566,893 + -1.5
566,893 + +0.8
566,940 - -1.7
567,021 + -0.4
567,021 + -0.9
567,021 + -0.6
567,021 + +0.3
567,022 - -0.3
567,022 - -1.0
567,022 - +1.5
567,058 - -0.6
567,285 + GFF2506 0.20 +1.0
567,285 + GFF2506 0.20 -1.6
567,285 + GFF2506 0.20 +0.9
567,285 + GFF2506 0.20 -0.7
567,286 - GFF2506 0.20 -1.0
567,286 - GFF2506 0.20 -0.3
567,286 - GFF2506 0.20 -2.5
567,286 - GFF2506 0.20 +0.2
567,381 + GFF2506 0.26 +1.4
567,381 + GFF2506 0.26 -0.7
567,381 + GFF2506 0.26 +0.2
567,382 - GFF2506 0.26 -0.9
567,444 + GFF2506 0.30 -3.0
567,444 + GFF2506 0.30 -1.1
567,444 + GFF2506 0.30 +0.1
567,444 + GFF2506 0.30 -0.0
567,445 - GFF2506 0.30 +0.8
567,445 - GFF2506 0.30 +1.5
567,534 + GFF2506 0.36 -1.7
567,534 + GFF2506 0.36 -2.6
567,535 - GFF2506 0.36 -2.0
567,535 - GFF2506 0.36 +0.5
567,535 - GFF2506 0.36 -0.4
567,535 - GFF2506 0.36 +1.1
567,535 - GFF2506 0.36 +0.8
567,576 + GFF2506 0.39 -1.3
567,576 + GFF2506 0.39 -1.8
567,576 + GFF2506 0.39 -1.4
567,576 + GFF2506 0.39 +0.8
567,576 + GFF2506 0.39 -1.3
567,576 + GFF2506 0.39 -0.7
567,577 - GFF2506 0.39 -1.2
567,577 - GFF2506 0.39 +1.9
567,577 - GFF2506 0.39 -0.3
567,577 - GFF2506 0.39 -1.8
567,577 - GFF2506 0.39 -0.6
567,577 - GFF2506 0.39 +0.2
567,577 - GFF2506 0.39 +2.7
567,577 - GFF2506 0.39 -0.6
567,577 - GFF2506 0.39 +1.3
567,577 - GFF2506 0.39 -1.8
567,582 + GFF2506 0.39 +0.7
567,582 + GFF2506 0.39 -0.5
567,582 + GFF2506 0.39 -0.3
567,582 + GFF2506 0.39 -2.6
567,582 + GFF2506 0.39 -1.8
567,582 + GFF2506 0.39 -0.2
567,583 - GFF2506 0.39 -2.1
567,583 - GFF2506 0.39 +0.9
567,651 + GFF2506 0.44 -1.1
567,652 - GFF2506 0.44 -2.3
567,652 - GFF2506 0.44 -2.6
567,652 - GFF2506 0.44 -0.5
567,738 + GFF2506 0.50 +0.5
567,739 - GFF2506 0.50 +0.2
567,751 + GFF2506 0.51 -1.8
567,751 + GFF2506 0.51 +1.3
567,751 + GFF2506 0.51 +2.9
567,751 + GFF2506 0.51 -1.2
567,752 - GFF2506 0.51 +1.0
567,753 + GFF2506 0.51 +0.4
567,753 + GFF2506 0.51 +0.0
567,753 + GFF2506 0.51 +1.1
567,754 - GFF2506 0.51 +0.2
567,778 + GFF2506 0.53 -2.0
567,780 + GFF2506 0.53 -0.2
567,780 + GFF2506 0.53 +0.8
567,780 + GFF2506 0.53 -2.4
567,781 - GFF2506 0.53 -0.2
567,781 - GFF2506 0.53 +0.4
567,781 - GFF2506 0.53 +0.6
567,781 - GFF2506 0.53 +0.8
567,781 - GFF2506 0.53 -0.8
567,831 + GFF2506 0.56 -0.7
567,831 + GFF2506 0.56 -3.3
567,831 + GFF2506 0.56 -1.2
567,924 + GFF2506 0.62 -1.5
567,924 + GFF2506 0.62 +0.3
567,924 + GFF2506 0.62 -2.3
567,924 + GFF2506 0.62 -1.1
567,924 + GFF2506 0.62 -0.8
567,925 - GFF2506 0.62 -1.0
567,925 - GFF2506 0.62 -1.2
567,925 - GFF2506 0.62 -1.9
567,925 - GFF2506 0.62 -0.1

Or see this region's nucleotide sequence