Strain Fitness in Variovorax sp. SCN45 around GFF249

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF248 and GFF249 are separated by 62 nucleotidesGFF249 and GFF250 are separated by 19 nucleotidesGFF250 and GFF251 are separated by 91 nucleotides GFF248 - Cell division protein FtsH (EC 3.4.24.-), at 278,391 to 280,544 GFF248 GFF249 - N-acetylglutamate synthase (EC 2.3.1.1), at 280,607 to 281,953 GFF249 GFF250 - Homoserine/homoserine lactone efflux protein, at 281,973 to 282,611 GFF250 GFF251 - hypothetical protein, at 282,703 to 283,704 GFF251 Position (kb) 280 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 279.615 kb on + strand, within GFF248at 279.616 kb on - strand, within GFF248at 279.745 kb on + strand, within GFF248at 279.906 kb on + strand, within GFF248at 279.906 kb on + strand, within GFF248at 279.972 kb on + strand, within GFF248at 279.972 kb on + strand, within GFF248at 279.973 kb on - strand, within GFF248at 279.973 kb on - strand, within GFF248at 279.981 kb on + strand, within GFF248at 279.981 kb on + strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.422 kb on + strandat 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.481 kb on - strand, within GFF250at 282.591 kb on + strandat 282.709 kb on + strandat 282.710 kb on - strandat 282.710 kb on - strandat 282.710 kb on - strandat 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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279,615 + GFF248 0.57 +0.8
279,616 - GFF248 0.57 +0.4
279,745 + GFF248 0.63 -1.3
279,906 + GFF248 0.70 -1.5
279,906 + GFF248 0.70 -0.2
279,972 + GFF248 0.73 -0.5
279,972 + GFF248 0.73 -1.5
279,973 - GFF248 0.73 -1.3
279,973 - GFF248 0.73 -2.9
279,981 + GFF248 0.74 +1.9
279,981 + GFF248 0.74 +1.1
279,982 - GFF248 0.74 +0.9
279,982 - GFF248 0.74 +0.4
279,982 - GFF248 0.74 +0.1
279,982 - GFF248 0.74 -0.2
279,982 - GFF248 0.74 +0.0
279,982 - GFF248 0.74 +1.0
279,982 - GFF248 0.74 -0.4
279,982 - GFF248 0.74 -1.0
279,982 - GFF248 0.74 -0.2
280,137 + GFF248 0.81 -0.1
280,137 + GFF248 0.81 -2.7
280,137 + GFF248 0.81 -1.5
280,137 + GFF248 0.81 -0.8
280,137 + GFF248 0.81 -2.9
280,137 + GFF248 0.81 -1.2
280,138 - GFF248 0.81 -2.1
280,138 - GFF248 0.81 -1.5
280,138 - GFF248 0.81 -0.8
280,138 - GFF248 0.81 -0.5
280,138 - GFF248 0.81 -2.6
280,422 + -2.1
282,216 + GFF250 0.38 -1.2
282,216 + GFF250 0.38 +0.9
282,216 + GFF250 0.38 +0.3
282,216 + GFF250 0.38 -0.3
282,216 + GFF250 0.38 -0.0
282,217 - GFF250 0.38 +1.0
282,217 - GFF250 0.38 -1.9
282,217 - GFF250 0.38 +0.1
282,363 + GFF250 0.61 -1.4
282,363 + GFF250 0.61 -0.8
282,363 + GFF250 0.61 -0.8
282,363 + GFF250 0.61 +2.0
282,363 + GFF250 0.61 +0.4
282,363 + GFF250 0.61 +0.3
282,363 + GFF250 0.61 +0.2
282,363 + GFF250 0.61 -0.8
282,363 + GFF250 0.61 +0.8
282,364 - GFF250 0.61 -1.1
282,364 - GFF250 0.61 +0.3
282,364 - GFF250 0.61 -1.5
282,364 - GFF250 0.61 +1.0
282,426 + GFF250 0.71 +0.5
282,426 + GFF250 0.71 -1.4
282,426 + GFF250 0.71 +0.8
282,426 + GFF250 0.71 -0.8
282,426 + GFF250 0.71 +0.1
282,427 - GFF250 0.71 +1.9
282,427 - GFF250 0.71 -2.1
282,427 - GFF250 0.71 -0.2
282,427 - GFF250 0.71 -2.4
282,427 - GFF250 0.71 -0.0
282,427 - GFF250 0.71 +0.8
282,427 - GFF250 0.71 +0.1
282,427 - GFF250 0.71 -0.2
282,427 - GFF250 0.71 -0.2
282,427 - GFF250 0.71 +1.2
282,480 + GFF250 0.79 -3.2
282,480 + GFF250 0.79 -0.8
282,480 + GFF250 0.79 -2.4
282,480 + GFF250 0.79 +0.2
282,480 + GFF250 0.79 -3.3
282,480 + GFF250 0.79 +0.5
282,481 - GFF250 0.79 -0.6
282,591 + -1.6
282,709 + +0.2
282,710 - -0.4
282,710 - +0.0
282,710 - -1.9
282,856 + GFF251 0.15 +1.2
282,856 + GFF251 0.15 +2.8
282,856 + GFF251 0.15 -1.2
282,856 + GFF251 0.15 +0.5
282,856 + GFF251 0.15 -1.0
282,857 - GFF251 0.15 -0.6
282,857 - GFF251 0.15 -0.4
282,857 - GFF251 0.15 +0.0
282,857 - GFF251 0.15 -1.5
282,865 + GFF251 0.16 -1.0
282,865 + GFF251 0.16 +0.3
282,865 + GFF251 0.16 +1.5
282,865 + GFF251 0.16 -0.8
282,865 + GFF251 0.16 -0.9
282,865 + GFF251 0.16 -1.3
282,865 + GFF251 0.16 -4.0
282,865 + GFF251 0.16 -2.6
282,866 - GFF251 0.16 -1.2
282,866 - GFF251 0.16 -0.8
282,866 - GFF251 0.16 -0.2
282,866 - GFF251 0.16 -0.6
282,919 + GFF251 0.22 +2.0
282,919 + GFF251 0.22 +0.1
282,919 + GFF251 0.22 -0.8
282,920 - GFF251 0.22 +0.3
282,920 - GFF251 0.22 -1.0
282,920 - GFF251 0.22 -0.8
282,920 - GFF251 0.22 -2.7
282,920 - GFF251 0.22 +0.3

Or see this region's nucleotide sequence