Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2391 and GFF2392 overlap by 4 nucleotides GFF2392 and GFF2393 are separated by 14 nucleotides GFF2393 and GFF2394 are separated by 34 nucleotides GFF2394 and GFF2395 are separated by 44 nucleotides
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
GFF2392 - Biopolymer transport protein ExbD/TolR, at 442,365 to 442,799
GFF2392
GFF2393 - Biopolymer transport protein ExbD/TolR, at 442,814 to 443,242
GFF2393
GFF2394 - MotA/TolQ/ExbB proton channel family protein, at 443,277 to 444,146
GFF2394
GFF2395 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 444,191 to 445,384
GFF2395
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.872 kb on - strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.272 kb on + strand, within GFF2391 at 442.273 kb on - strand, within GFF2391 at 442.878 kb on + strand, within GFF2393 at 442.879 kb on - strand, within GFF2393 at 443.016 kb on + strand, within GFF2393 at 443.017 kb on - strand, within GFF2393 at 443.377 kb on + strand, within GFF2394 at 443.377 kb on + strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.836 kb on + strand, within GFF2394 at 443.837 kb on - strand, within GFF2394
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 441,871 + GFF2391 0.24 -0.0 441,871 + GFF2391 0.24 +0.3 441,871 + GFF2391 0.24 +0.4 441,872 - GFF2391 0.24 +0.1 442,106 + GFF2391 0.60 -1.8 442,106 + GFF2391 0.60 +0.1 442,106 + GFF2391 0.60 -0.6 442,106 + GFF2391 0.60 -2.2 442,106 + GFF2391 0.60 +2.4 442,272 + GFF2391 0.85 -2.4 442,273 - GFF2391 0.85 +0.2 442,878 + GFF2393 0.15 +0.9 442,879 - GFF2393 0.15 -0.6 443,016 + GFF2393 0.47 +1.5 443,017 - GFF2393 0.47 -1.4 443,377 + GFF2394 0.11 +1.6 443,377 + GFF2394 0.11 +2.1 443,504 - GFF2394 0.26 +1.4 443,504 - GFF2394 0.26 -1.4 443,504 - GFF2394 0.26 -0.6 443,504 - GFF2394 0.26 +2.5 443,504 - GFF2394 0.26 -1.4 443,836 + GFF2394 0.64 -0.6 443,837 - GFF2394 0.64 -2.7
Or see this region's nucleotide sequence