Strain Fitness in Variovorax sp. SCN45 around GFF2289

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2288 and GFF2289 are separated by 0 nucleotidesGFF2289 and GFF2290 are separated by 111 nucleotidesGFF2290 and GFF2291 are separated by 81 nucleotides GFF2288 - Glutathione-regulated potassium-efflux system protein KefC, at 343,350 to 345,206 GFF2288 GFF2289 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 345,207 to 345,914 GFF2289 GFF2290 - Chromosome partitioning protein ParA, at 346,026 to 346,646 GFF2290 GFF2291 - Nodulation protein N-related dehydratase, at 346,728 to 347,189 GFF2291 Position (kb) 345 346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 344.227 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.258 kb on - strand, within GFF2288at 345.100 kb on + strandat 345.101 kb on - strandat 345.166 kb on + strandat 345.167 kb on - strandat 345.167 kb on - strandat 345.445 kb on + strand, within GFF2289at 345.445 kb on + strand, within GFF2289at 345.445 kb on + strand, within GFF2289at 345.446 kb on - strand, within GFF2289at 345.446 kb on - strand, within GFF2289at 345.527 kb on - strand, within GFF2289at 345.527 kb on - strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.535 kb on + strand, within GFF2289at 345.536 kb on - strand, within GFF2289at 345.536 kb on - strand, within GFF2289at 345.536 kb on - strand, within GFF2289at 345.550 kb on + strand, within GFF2289at 345.550 kb on + strand, within GFF2289at 345.550 kb on + strand, within GFF2289at 345.550 kb on + strand, within GFF2289at 345.551 kb on - strand, within GFF2289at 345.551 kb on - strand, within GFF2289at 345.625 kb on + strand, within GFF2289at 345.626 kb on - strand, within GFF2289at 345.683 kb on - strand, within GFF2289at 345.685 kb on + strand, within GFF2289at 345.685 kb on + strand, within GFF2289at 345.685 kb on + strand, within GFF2289at 345.686 kb on - strand, within GFF2289at 345.686 kb on - strand, within GFF2289at 345.773 kb on - strand, within GFF2289at 345.773 kb on - strand, within GFF2289at 345.773 kb on - strand, within GFF2289at 345.773 kb on - strand, within GFF2289at 345.781 kb on + strand, within GFF2289at 345.781 kb on + strand, within GFF2289at 345.880 kb on + strandat 345.880 kb on + strandat 345.880 kb on + strandat 345.880 kb on + strandat 345.880 kb on + strandat 345.880 kb on + strandat 345.880 kb on + strandat 345.881 kb on - strandat 345.881 kb on - strandat 345.881 kb on - strandat 345.881 kb on - strandat 345.881 kb on - strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.944 kb on + strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.945 kb on - strandat 345.989 kb on + strandat 345.990 kb on - strandat 346.025 kb on + strandat 346.025 kb on + strandat 346.026 kb on - strandat 346.363 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.365 kb on + strand, within GFF2290at 346.366 kb on - strand, within GFF2290at 346.366 kb on - strand, within GFF2290at 346.366 kb on - strand, within GFF2290at 346.366 kb on - strand, within GFF2290at 346.366 kb on - strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.539 kb on + strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290at 346.540 kb on - strand, within GFF2290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
344,227 + GFF2288 0.47 +0.1
344,257 + GFF2288 0.49 +2.0
344,257 + GFF2288 0.49 -1.9
344,257 + GFF2288 0.49 +1.0
344,257 + GFF2288 0.49 +0.0
344,257 + GFF2288 0.49 -0.4
344,257 + GFF2288 0.49 -0.5
344,257 + GFF2288 0.49 -1.7
344,258 - GFF2288 0.49 -1.0
345,100 + +1.9
345,101 - -2.1
345,166 + -1.3
345,167 - -3.9
345,167 - +0.9
345,445 + GFF2289 0.34 +0.3
345,445 + GFF2289 0.34 -4.5
345,445 + GFF2289 0.34 -1.3
345,446 - GFF2289 0.34 -0.2
345,446 - GFF2289 0.34 +1.9
345,527 - GFF2289 0.45 -1.2
345,527 - GFF2289 0.45 +0.8
345,535 + GFF2289 0.46 +0.5
345,535 + GFF2289 0.46 -3.1
345,535 + GFF2289 0.46 -1.8
345,535 + GFF2289 0.46 +2.4
345,535 + GFF2289 0.46 +2.4
345,535 + GFF2289 0.46 -1.8
345,536 - GFF2289 0.46 -2.0
345,536 - GFF2289 0.46 -0.8
345,536 - GFF2289 0.46 -3.2
345,550 + GFF2289 0.48 -0.1
345,550 + GFF2289 0.48 +0.1
345,550 + GFF2289 0.48 +1.3
345,550 + GFF2289 0.48 -0.3
345,551 - GFF2289 0.49 -1.3
345,551 - GFF2289 0.49 -1.3
345,625 + GFF2289 0.59 -0.7
345,626 - GFF2289 0.59 +1.6
345,683 - GFF2289 0.67 -0.9
345,685 + GFF2289 0.68 +0.4
345,685 + GFF2289 0.68 +0.4
345,685 + GFF2289 0.68 -1.1
345,686 - GFF2289 0.68 +0.1
345,686 - GFF2289 0.68 +2.1
345,773 - GFF2289 0.80 +1.4
345,773 - GFF2289 0.80 +1.2
345,773 - GFF2289 0.80 -1.5
345,773 - GFF2289 0.80 +1.2
345,781 + GFF2289 0.81 -1.4
345,781 + GFF2289 0.81 -1.4
345,880 + +0.8
345,880 + +0.1
345,880 + -2.6
345,880 + -0.2
345,880 + +0.8
345,880 + +0.4
345,880 + -0.2
345,881 - -0.8
345,881 - -1.3
345,881 - +0.5
345,881 - +1.2
345,881 - -0.8
345,944 + -1.4
345,944 + +1.0
345,944 + -1.2
345,944 + -2.0
345,944 + -0.8
345,944 + +0.3
345,944 + -1.1
345,944 + -2.2
345,944 + +2.8
345,944 + -1.8
345,944 + +0.6
345,944 + +0.4
345,945 - +2.1
345,945 - -1.7
345,945 - -0.3
345,945 - +0.8
345,945 - +0.6
345,945 - +0.8
345,945 - -2.3
345,945 - +2.2
345,945 - -0.3
345,945 - +0.1
345,945 - -0.8
345,945 - -0.2
345,989 + +2.0
345,990 - -0.2
346,025 + -3.3
346,025 + +1.0
346,026 - -0.9
346,363 + GFF2290 0.54 +0.0
346,365 + GFF2290 0.55 -0.9
346,365 + GFF2290 0.55 -4.0
346,365 + GFF2290 0.55 -1.9
346,365 + GFF2290 0.55 +0.2
346,365 + GFF2290 0.55 -0.9
346,365 + GFF2290 0.55 +0.1
346,365 + GFF2290 0.55 +0.4
346,365 + GFF2290 0.55 -1.8
346,366 - GFF2290 0.55 -0.4
346,366 - GFF2290 0.55 -1.9
346,366 - GFF2290 0.55 +0.6
346,366 - GFF2290 0.55 -0.5
346,366 - GFF2290 0.55 -1.4
346,539 + GFF2290 0.83 -0.9
346,539 + GFF2290 0.83 -2.8
346,539 + GFF2290 0.83 -1.8
346,539 + GFF2290 0.83 +0.8
346,539 + GFF2290 0.83 +0.7
346,539 + GFF2290 0.83 +1.4
346,539 + GFF2290 0.83 -2.0
346,539 + GFF2290 0.83 -0.8
346,539 + GFF2290 0.83 +0.8
346,539 + GFF2290 0.83 -1.2
346,539 + GFF2290 0.83 +0.8
346,539 + GFF2290 0.83 -0.8
346,540 - GFF2290 0.83 -1.2
346,540 - GFF2290 0.83 -0.5
346,540 - GFF2290 0.83 -2.3
346,540 - GFF2290 0.83 +1.8
346,540 - GFF2290 0.83 -1.1
346,540 - GFF2290 0.83 -1.6
346,540 - GFF2290 0.83 -0.4
346,540 - GFF2290 0.83 +0.6
346,540 - GFF2290 0.83 -0.9
346,540 - GFF2290 0.83 +0.2
346,540 - GFF2290 0.83 +0.1

Or see this region's nucleotide sequence