Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2201 and GFF2202 are separated by 61 nucleotides GFF2202 and GFF2203 overlap by 4 nucleotides GFF2203 and GFF2204 are separated by 34 nucleotides GFF2204 and GFF2205 are separated by 146 nucleotides
GFF2201 - hypothetical protein, at 263,129 to 265,156
GFF2201
GFF2202 - hypothetical protein, at 265,218 to 265,712
GFF2202
GFF2203 - no description, at 265,709 to 266,182
GFF2203
GFF2204 - no description, at 266,217 to 266,450
GFF2204
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
Position (kb) 265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 264.368 kb on - strand, within GFF2201 at 264.425 kb on + strand, within GFF2201 at 264.426 kb on - strand, within GFF2201 at 264.593 kb on + strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.610 kb on + strand, within GFF2201 at 264.610 kb on + strand, within GFF2201 at 264.611 kb on - strand, within GFF2201 at 264.611 kb on - strand, within GFF2201 at 264.773 kb on + strand, within GFF2201 at 264.773 kb on + strand, within GFF2201 at 264.774 kb on - strand, within GFF2201 at 264.867 kb on - strand, within GFF2201 at 264.882 kb on + strand, within GFF2201 at 264.883 kb on - strand, within GFF2201 at 264.883 kb on - strand, within GFF2201 at 264.898 kb on + strand, within GFF2201 at 264.898 kb on + strand, within GFF2201 at 265.089 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.211 kb on - strand at 265.211 kb on - strand at 265.321 kb on + strand, within GFF2202 at 265.469 kb on - strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.573 kb on + strand, within GFF2202 at 265.573 kb on + strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.603 kb on + strand, within GFF2202 at 265.790 kb on + strand, within GFF2203 at 265.985 kb on + strand, within GFF2203 at 265.990 kb on + strand, within GFF2203 at 265.999 kb on - strand, within GFF2203 at 266.071 kb on - strand, within GFF2203 at 266.311 kb on + strand, within GFF2204 at 266.311 kb on + strand, within GFF2204 at 266.312 kb on - strand, within GFF2204 at 266.425 kb on + strand, within GFF2204 at 266.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 264,368 - GFF2201 0.61 +1.6 264,425 + GFF2201 0.64 -1.8 264,426 - GFF2201 0.64 -0.9 264,593 + GFF2201 0.72 -0.2 264,594 - GFF2201 0.72 +1.4 264,594 - GFF2201 0.72 -0.8 264,594 - GFF2201 0.72 +2.2 264,610 + GFF2201 0.73 -1.8 264,610 + GFF2201 0.73 +0.1 264,611 - GFF2201 0.73 +1.4 264,611 - GFF2201 0.73 +0.4 264,773 + GFF2201 0.81 -1.4 264,773 + GFF2201 0.81 +1.4 264,774 - GFF2201 0.81 +0.5 264,867 - GFF2201 0.86 +1.0 264,882 + GFF2201 0.86 -2.2 264,883 - GFF2201 0.86 -0.5 264,883 - GFF2201 0.86 -1.0 264,898 + GFF2201 0.87 -0.2 264,898 + GFF2201 0.87 -0.4 265,089 + -1.3 265,210 + -3.9 265,210 + +0.1 265,210 + +0.4 265,210 + -2.8 265,211 - -0.6 265,211 - +1.5 265,321 + GFF2202 0.21 -0.8 265,469 - GFF2202 0.51 -0.8 265,569 + GFF2202 0.71 -3.3 265,569 + GFF2202 0.71 -0.7 265,569 + GFF2202 0.71 +1.4 265,569 + GFF2202 0.71 -0.5 265,569 + GFF2202 0.71 +1.2 265,570 - GFF2202 0.71 +0.5 265,570 - GFF2202 0.71 +0.1 265,570 - GFF2202 0.71 -0.8 265,570 - GFF2202 0.71 -0.8 265,570 - GFF2202 0.71 -1.3 265,570 - GFF2202 0.71 +0.4 265,570 - GFF2202 0.71 -1.0 265,573 + GFF2202 0.72 -3.5 265,573 + GFF2202 0.72 +1.8 265,574 - GFF2202 0.72 +0.9 265,574 - GFF2202 0.72 +2.4 265,574 - GFF2202 0.72 +2.7 265,574 - GFF2202 0.72 +0.9 265,575 + GFF2202 0.72 -1.2 265,575 + GFF2202 0.72 -0.5 265,575 + GFF2202 0.72 -0.9 265,575 + GFF2202 0.72 +0.7 265,575 + GFF2202 0.72 +0.7 265,575 + GFF2202 0.72 +1.7 265,575 + GFF2202 0.72 -0.3 265,576 - GFF2202 0.72 -0.2 265,576 - GFF2202 0.72 -1.1 265,576 - GFF2202 0.72 +0.0 265,576 - GFF2202 0.72 -0.8 265,603 + GFF2202 0.78 +0.4 265,790 + GFF2203 0.17 +0.4 265,985 + GFF2203 0.58 -2.0 265,990 + GFF2203 0.59 -0.5 265,999 - GFF2203 0.61 -1.1 266,071 - GFF2203 0.76 -1.1 266,311 + GFF2204 0.40 -1.9 266,311 + GFF2204 0.40 -0.7 266,312 - GFF2204 0.41 +2.9 266,425 + GFF2204 0.89 +0.7 266,606 - -3.3
Or see this region's nucleotide sequence