Strain Fitness in Variovorax sp. SCN45 around GFF2159

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2157 and GFF2158 are separated by 8 nucleotidesGFF2158 and GFF2159 overlap by 4 nucleotidesGFF2159 and GFF2160 overlap by 1 nucleotidesGFF2160 and GFF2161 overlap by 4 nucleotides GFF2157 - UPF0301 protein YqgE, at 210,912 to 211,511 GFF2157 GFF2158 - Putative pre-16S rRNA nuclease YqgF, at 211,520 to 211,969 GFF2158 GFF2159 - Pyrimidine operon regulatory protein PyrR, at 211,966 to 212,463 GFF2159 GFF2160 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 212,463 to 213,425 GFF2160 GFF2161 - Dihydroorotase (EC 3.5.2.3), at 213,422 to 214,711 GFF2161 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.335 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.996 kb on + strandat 211.996 kb on + strandat 211.996 kb on + strandat 211.997 kb on - strandat 211.997 kb on - strandat 212.018 kb on + strand, within GFF2159at 212.019 kb on - strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.470 kb on - strandat 212.470 kb on - strandat 212.470 kb on - strandat 212.470 kb on - strandat 212.838 kb on + strand, within GFF2160at 212.838 kb on + strand, within GFF2160at 212.839 kb on - strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.931 kb on + strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.932 kb on - strand, within GFF2160at 212.946 kb on + strand, within GFF2160at 212.946 kb on + strand, within GFF2160at 212.947 kb on - strand, within GFF2160at 213.413 kb on + strandat 213.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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211,005 + GFF2157 0.15 +0.2
211,005 + GFF2157 0.15 -1.4
211,005 + GFF2157 0.15 -1.3
211,006 - GFF2157 0.16 -0.6
211,006 - GFF2157 0.16 -0.7
211,224 + GFF2157 0.52 +0.4
211,224 + GFF2157 0.52 -0.4
211,224 + GFF2157 0.52 -0.4
211,224 + GFF2157 0.52 +1.4
211,225 - GFF2157 0.52 -1.0
211,225 - GFF2157 0.52 -1.5
211,225 - GFF2157 0.52 -0.5
211,335 + GFF2157 0.70 -3.9
211,443 + GFF2157 0.89 -1.4
211,443 + GFF2157 0.89 -1.6
211,443 + GFF2157 0.89 -1.4
211,443 + GFF2157 0.89 -1.3
211,996 + +1.0
211,996 + -1.1
211,996 + -4.0
211,997 - +0.4
211,997 - +0.2
212,018 + GFF2159 0.10 -2.5
212,019 - GFF2159 0.11 -1.3
212,245 + GFF2159 0.56 -2.2
212,245 + GFF2159 0.56 +0.8
212,245 + GFF2159 0.56 -1.9
212,245 + GFF2159 0.56 -0.6
212,246 - GFF2159 0.56 -2.6
212,246 - GFF2159 0.56 +1.0
212,246 - GFF2159 0.56 -0.3
212,246 - GFF2159 0.56 -2.8
212,246 - GFF2159 0.56 +0.1
212,461 + +0.0
212,461 + -1.8
212,461 + +1.2
212,461 + +1.5
212,461 + -0.3
212,461 + -2.1
212,461 + +0.9
212,461 + -1.0
212,461 + -0.0
212,461 + -1.5
212,462 - +1.5
212,462 - +0.2
212,462 - +0.6
212,462 - -0.0
212,462 - -0.4
212,462 - +1.4
212,462 - +2.2
212,462 - -2.8
212,462 - +1.7
212,462 - +0.1
212,462 - -1.3
212,462 - +0.7
212,469 + -0.2
212,469 + +0.1
212,469 + +0.8
212,469 + -1.2
212,469 + -2.0
212,470 - -2.4
212,470 - -0.3
212,470 - -0.4
212,470 - -2.8
212,838 + GFF2160 0.39 +0.1
212,838 + GFF2160 0.39 +0.9
212,839 - GFF2160 0.39 -2.5
212,931 + GFF2160 0.49 -0.4
212,931 + GFF2160 0.49 -0.8
212,931 + GFF2160 0.49 -0.6
212,931 + GFF2160 0.49 +1.1
212,931 + GFF2160 0.49 -0.9
212,931 + GFF2160 0.49 -1.8
212,931 + GFF2160 0.49 -2.9
212,932 - GFF2160 0.49 -1.8
212,932 - GFF2160 0.49 -1.1
212,932 - GFF2160 0.49 -1.9
212,932 - GFF2160 0.49 -1.4
212,932 - GFF2160 0.49 -1.4
212,932 - GFF2160 0.49 -2.8
212,932 - GFF2160 0.49 +0.7
212,932 - GFF2160 0.49 -1.3
212,932 - GFF2160 0.49 -1.0
212,932 - GFF2160 0.49 -2.2
212,932 - GFF2160 0.49 -2.3
212,932 - GFF2160 0.49 -0.3
212,932 - GFF2160 0.49 -0.2
212,946 + GFF2160 0.50 +0.3
212,946 + GFF2160 0.50 +1.4
212,947 - GFF2160 0.50 -4.0
213,413 + -0.8
213,414 - +1.0

Or see this region's nucleotide sequence