Strain Fitness in Variovorax sp. SCN45 around GFF2130

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2128 and GFF2129 are separated by 96 nucleotidesGFF2129 and GFF2130 are separated by 61 nucleotidesGFF2130 and GFF2131 overlap by 4 nucleotides GFF2128 - Enoyl-CoA hydratase (EC 4.2.1.17), at 177,643 to 178,422 GFF2128 GFF2129 - small multidrug resistance family (SMR) protein, at 178,519 to 178,854 GFF2129 GFF2130 - hypothetical protein, at 178,916 to 179,506 GFF2130 GFF2131 - Putative protease, at 179,503 to 181,353 GFF2131 Position (kb) 178 179 180Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.415 kb on + strandat 178.415 kb on + strandat 178.416 kb on - strandat 178.461 kb on - strandat 178.461 kb on - strandat 178.462 kb on + strandat 178.462 kb on + strandat 178.462 kb on + strandat 178.463 kb on - strandat 178.506 kb on + strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.532 kb on - strandat 178.537 kb on + strandat 178.537 kb on + strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.639 kb on + strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.946 kb on + strandat 178.946 kb on + strandat 178.946 kb on + strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 179.282 kb on + strand, within GFF2130at 179.282 kb on + strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.396 kb on + strand, within GFF2130at 179.397 kb on - strand, within GFF2130at 179.504 kb on + strandat 179.505 kb on - strandat 179.648 kb on + strandat 179.648 kb on + strandat 179.648 kb on + strandat 179.649 kb on - strandat 179.649 kb on - strandat 179.954 kb on + strand, within GFF2131at 179.954 kb on + strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.161 kb on + strand, within GFF2131at 180.161 kb on + strand, within GFF2131at 180.162 kb on - strand, within GFF2131at 180.162 kb on - strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.165 kb on - strand, within GFF2131at 180.165 kb on - strand, within GFF2131at 180.263 kb on + strand, within GFF2131at 180.311 kb on + strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
178,172 + GFF2128 0.68 -2.3
178,172 + GFF2128 0.68 -0.9
178,172 + GFF2128 0.68 +0.4
178,172 + GFF2128 0.68 -5.0
178,172 + GFF2128 0.68 -0.4
178,172 + GFF2128 0.68 -2.5
178,172 + GFF2128 0.68 -3.9
178,184 + GFF2128 0.69 -2.1
178,184 + GFF2128 0.69 -4.7
178,184 + GFF2128 0.69 +0.4
178,184 + GFF2128 0.69 +1.4
178,184 + GFF2128 0.69 -3.2
178,185 - GFF2128 0.69 -2.7
178,185 - GFF2128 0.69 -1.4
178,185 - GFF2128 0.69 -3.0
178,185 - GFF2128 0.69 -2.0
178,185 - GFF2128 0.69 -0.2
178,202 + GFF2128 0.72 -3.3
178,202 + GFF2128 0.72 -3.8
178,202 + GFF2128 0.72 -1.0
178,202 + GFF2128 0.72 -4.2
178,202 + GFF2128 0.72 -2.0
178,203 - GFF2128 0.72 -3.3
178,203 - GFF2128 0.72 -3.4
178,203 - GFF2128 0.72 -4.7
178,203 - GFF2128 0.72 -2.9
178,415 + -0.7
178,415 + -1.6
178,416 - -2.7
178,461 - +0.0
178,461 - -2.0
178,462 + -4.3
178,462 + +1.0
178,462 + -1.8
178,463 - +1.3
178,506 + +0.8
178,507 - -0.2
178,507 - -2.8
178,507 - +0.7
178,531 + -0.8
178,531 + -0.7
178,531 + +0.7
178,531 + -1.9
178,531 + +0.4
178,531 + -1.6
178,531 + -0.4
178,531 + +0.4
178,531 + +1.7
178,532 - -2.5
178,537 + -1.2
178,537 + -2.5
178,538 - -1.4
178,538 - +0.4
178,538 - -1.5
178,538 - -3.5
178,538 - +0.8
178,639 + GFF2129 0.36 -0.4
178,640 - GFF2129 0.36 -2.5
178,640 - GFF2129 0.36 -2.3
178,699 + GFF2129 0.54 +2.4
178,699 + GFF2129 0.54 -0.8
178,946 + -1.2
178,946 + +0.1
178,946 + -0.7
178,947 - -0.5
178,947 - +0.7
178,947 - +1.7
178,947 - -0.4
178,947 - +3.4
179,282 + GFF2130 0.62 -1.1
179,282 + GFF2130 0.62 +1.4
179,283 - GFF2130 0.62 +2.0
179,283 - GFF2130 0.62 +2.1
179,283 - GFF2130 0.62 -0.1
179,283 - GFF2130 0.62 -1.0
179,283 - GFF2130 0.62 +1.0
179,283 - GFF2130 0.62 -0.7
179,396 + GFF2130 0.81 +0.4
179,397 - GFF2130 0.81 +0.5
179,504 + -2.7
179,505 - -2.1
179,648 + -1.5
179,648 + +0.1
179,648 + -0.0
179,649 - -1.9
179,649 - +1.0
179,954 + GFF2131 0.24 -0.7
179,954 + GFF2131 0.24 -0.5
179,955 - GFF2131 0.24 -2.2
179,955 - GFF2131 0.24 +1.3
179,955 - GFF2131 0.24 +0.3
179,955 - GFF2131 0.24 -2.8
180,119 + GFF2131 0.33 -0.2
180,119 + GFF2131 0.33 -2.3
180,119 + GFF2131 0.33 +1.4
180,119 + GFF2131 0.33 -2.0
180,120 - GFF2131 0.33 -2.5
180,120 - GFF2131 0.33 -0.4
180,120 - GFF2131 0.33 +0.6
180,120 - GFF2131 0.33 -1.3
180,120 - GFF2131 0.33 -1.7
180,122 + GFF2131 0.33 -0.8
180,122 + GFF2131 0.33 -1.4
180,122 + GFF2131 0.33 -0.9
180,122 + GFF2131 0.33 -2.9
180,123 - GFF2131 0.33 -1.0
180,123 - GFF2131 0.33 -3.7
180,123 - GFF2131 0.33 -2.0
180,123 - GFF2131 0.33 +0.1
180,123 - GFF2131 0.33 -0.8
180,123 - GFF2131 0.33 -2.6
180,123 - GFF2131 0.33 +0.4
180,123 - GFF2131 0.33 -1.5
180,123 - GFF2131 0.33 -1.7
180,123 - GFF2131 0.33 -0.2
180,123 - GFF2131 0.33 -1.8
180,123 - GFF2131 0.33 -0.9
180,161 + GFF2131 0.36 -0.7
180,161 + GFF2131 0.36 -1.8
180,162 - GFF2131 0.36 -0.6
180,162 - GFF2131 0.36 -0.5
180,164 + GFF2131 0.36 -0.3
180,164 + GFF2131 0.36 -1.2
180,164 + GFF2131 0.36 +0.1
180,164 + GFF2131 0.36 +0.4
180,164 + GFF2131 0.36 +0.7
180,164 + GFF2131 0.36 -0.2
180,164 + GFF2131 0.36 -2.2
180,165 - GFF2131 0.36 -2.3
180,165 - GFF2131 0.36 +0.5
180,263 + GFF2131 0.41 -1.0
180,311 + GFF2131 0.44 -3.2
180,312 - GFF2131 0.44 -1.3
180,312 - GFF2131 0.44 +0.2
180,312 - GFF2131 0.44 -0.5
180,312 - GFF2131 0.44 -1.2
180,314 + GFF2131 0.44 -2.4
180,314 + GFF2131 0.44 +0.4
180,314 + GFF2131 0.44 -0.4
180,315 - GFF2131 0.44 -1.7
180,315 - GFF2131 0.44 -1.3
180,315 - GFF2131 0.44 -0.4
180,315 - GFF2131 0.44 -0.7
180,315 - GFF2131 0.44 -1.3
180,353 + GFF2131 0.46 -0.6
180,353 + GFF2131 0.46 +1.0
180,353 + GFF2131 0.46 -0.7
180,368 + GFF2131 0.47 +0.3
180,368 + GFF2131 0.47 +0.2
180,369 - GFF2131 0.47 -1.9
180,369 - GFF2131 0.47 -0.3
180,369 - GFF2131 0.47 -1.5
180,369 - GFF2131 0.47 -1.3
180,369 - GFF2131 0.47 -4.1
180,425 + GFF2131 0.50 +0.8
180,425 + GFF2131 0.50 -0.2
180,425 + GFF2131 0.50 -0.2
180,425 + GFF2131 0.50 +1.9
180,425 + GFF2131 0.50 -0.2
180,425 + GFF2131 0.50 -0.4
180,425 + GFF2131 0.50 -0.2
180,426 - GFF2131 0.50 +0.6
180,426 - GFF2131 0.50 -1.3
180,458 + GFF2131 0.52 +0.3
180,458 + GFF2131 0.52 +1.4
180,458 + GFF2131 0.52 -1.3
180,458 + GFF2131 0.52 -0.6
180,459 - GFF2131 0.52 -1.1
180,459 - GFF2131 0.52 -0.6
180,459 - GFF2131 0.52 -1.2
180,459 - GFF2131 0.52 +1.2
180,459 - GFF2131 0.52 +0.3

Or see this region's nucleotide sequence