Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2081 and GFF2082 are separated by 273 nucleotides GFF2082 and GFF2083 are separated by 9 nucleotides GFF2083 and GFF2084 overlap by 4 nucleotides GFF2084 and GFF2085 overlap by 4 nucleotides
GFF2081 - no description, at 129,381 to 130,445
GFF2081
GFF2082 - transcriptional regulator, Crp/Fnr family, at 130,719 to 131,351
GFF2082
GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963
GFF2083
GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913
GFF2084
GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638
GFF2085
Position (kb) 131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.367 kb on - strand at 130.367 kb on - strand at 130.367 kb on - strand at 130.367 kb on - strand at 130.405 kb on + strand at 130.524 kb on + strand at 130.529 kb on + strand at 130.529 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.851 kb on + strand, within GFF2082 at 130.851 kb on + strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.924 kb on - strand, within GFF2082 at 130.930 kb on - strand, within GFF2082 at 131.133 kb on + strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.293 kb on - strand at 131.293 kb on - strand at 131.293 kb on - strand at 131.293 kb on - strand at 131.572 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.976 kb on + strand at 131.994 kb on + strand at 131.994 kb on + strand at 131.995 kb on - strand at 132.186 kb on + strand, within GFF2084 at 132.187 kb on - strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.597 kb on + strand, within GFF2084 at 132.598 kb on - strand, within GFF2084 at 132.639 kb on + strand, within GFF2084 at 132.640 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 130,367 - +0.7 130,367 - -3.2 130,367 - -0.7 130,367 - +1.2 130,405 + -1.9 130,524 + -1.6 130,529 + -2.3 130,529 + -3.8 130,743 + -0.6 130,743 + -2.1 130,743 + +0.4 130,743 + -0.7 130,851 + GFF2082 0.21 -2.8 130,851 + GFF2082 0.21 -1.5 130,852 - GFF2082 0.21 -1.4 130,852 - GFF2082 0.21 -2.4 130,852 - GFF2082 0.21 +0.1 130,924 - GFF2082 0.32 -1.0 130,930 - GFF2082 0.33 -0.6 131,133 + GFF2082 0.65 +0.4 131,134 - GFF2082 0.66 -0.2 131,134 - GFF2082 0.66 -0.4 131,134 - GFF2082 0.66 -1.5 131,134 - GFF2082 0.66 -1.6 131,293 - +0.6 131,293 - +0.8 131,293 - -1.3 131,293 - -0.1 131,572 + GFF2083 0.35 -0.4 131,728 + GFF2083 0.61 -3.3 131,728 + GFF2083 0.61 -1.4 131,728 + GFF2083 0.61 -2.2 131,729 - GFF2083 0.61 -0.2 131,729 - GFF2083 0.61 -0.7 131,729 - GFF2083 0.61 +0.2 131,976 + -0.8 131,994 + -0.2 131,994 + -0.9 131,995 - -0.8 132,186 + GFF2084 0.24 -2.1 132,187 - GFF2084 0.24 +1.7 132,303 + GFF2084 0.36 -0.4 132,303 + GFF2084 0.36 -0.7 132,303 + GFF2084 0.36 +1.4 132,303 + GFF2084 0.36 +1.3 132,304 - GFF2084 0.36 -0.4 132,304 - GFF2084 0.36 -2.0 132,304 - GFF2084 0.36 +0.8 132,304 - GFF2084 0.36 +2.6 132,304 - GFF2084 0.36 +0.4 132,522 + GFF2084 0.59 -2.4 132,522 + GFF2084 0.59 -0.4 132,523 - GFF2084 0.59 -0.4 132,523 - GFF2084 0.59 -2.4 132,534 + GFF2084 0.60 +0.0 132,534 + GFF2084 0.60 -0.2 132,534 + GFF2084 0.60 -2.3 132,535 - GFF2084 0.60 +0.8 132,535 - GFF2084 0.60 +0.8 132,535 - GFF2084 0.60 -2.2 132,535 - GFF2084 0.60 -0.2 132,535 - GFF2084 0.60 -4.6 132,544 - GFF2084 0.61 -1.1 132,544 - GFF2084 0.61 -0.9 132,576 + GFF2084 0.65 +1.7 132,576 + GFF2084 0.65 +0.5 132,576 + GFF2084 0.65 +0.8 132,576 + GFF2084 0.65 +0.4 132,577 - GFF2084 0.65 +0.6 132,577 - GFF2084 0.65 -4.1 132,577 - GFF2084 0.65 -0.4 132,577 - GFF2084 0.65 -0.9 132,577 - GFF2084 0.65 +0.0 132,597 + GFF2084 0.67 -0.7 132,598 - GFF2084 0.67 -1.3 132,639 + GFF2084 0.71 -1.2 132,640 - GFF2084 0.71 -0.4 132,670 - GFF2084 0.74 +0.8 132,670 - GFF2084 0.74 -0.4 132,670 - GFF2084 0.74 -1.5
Or see this region's nucleotide sequence