Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 are separated by 1 nucleotides GFF2041 and GFF2042 are separated by 99 nucleotides GFF2042 and GFF2043 overlap by 4 nucleotides GFF2043 and GFF2044 are separated by 108 nucleotides
GFF2040 - Putative drug efflux protein, at 88,226 to 89,476
GFF2040
GFF2041 - Haloacid dehalogenase-like hydrolase, at 89,478 to 90,311
GFF2041
GFF2042 - Efflux ABC transporter, ATP-binding protein, at 90,411 to 91,406
GFF2042
GFF2043 - Efflux ABC transporter, permease protein, at 91,403 to 92,242
GFF2043
GFF2044 - Efflux ABC transporter, permease protein, at 92,351 to 93,133
GFF2044
Position (kb) 90
91
92 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 89.426 kb on + strand at 89.426 kb on + strand at 89.426 kb on + strand at 89.427 kb on - strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.551 kb on + strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.749 kb on + strand, within GFF2041 at 89.992 kb on + strand, within GFF2041 at 89.992 kb on + strand, within GFF2041 at 89.993 kb on - strand, within GFF2041 at 89.993 kb on - strand, within GFF2041 at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.447 kb on + strand at 90.447 kb on + strand at 90.448 kb on - strand at 90.448 kb on - strand at 90.448 kb on - strand at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 91.377 kb on + strand at 91.377 kb on + strand at 91.378 kb on - strand at 91.378 kb on - strand at 91.378 kb on - strand at 91.433 kb on + strand at 91.433 kb on + strand at 91.433 kb on + strand at 91.433 kb on + strand at 91.433 kb on + strand at 91.434 kb on - strand at 91.434 kb on - strand at 91.434 kb on - strand at 91.553 kb on + strand, within GFF2043 at 91.553 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.607 kb on + strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.608 kb on - strand, within GFF2043 at 91.697 kb on + strand, within GFF2043 at 91.697 kb on + strand, within GFF2043 at 91.697 kb on + strand, within GFF2043 at 91.698 kb on - strand, within GFF2043 at 91.698 kb on - strand, within GFF2043 at 91.698 kb on - strand, within GFF2043 at 91.698 kb on - strand, within GFF2043 at 91.698 kb on - strand, within GFF2043 at 91.724 kb on + strand, within GFF2043 at 91.724 kb on + strand, within GFF2043 at 91.724 kb on + strand, within GFF2043 at 91.724 kb on + strand, within GFF2043 at 91.724 kb on + strand, within GFF2043 at 91.937 kb on - strand, within GFF2043 at 91.937 kb on - strand, within GFF2043 at 91.937 kb on - strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.108 kb on + strand, within GFF2043 at 92.109 kb on - strand, within GFF2043 at 92.109 kb on - strand, within GFF2043 at 92.109 kb on - strand, within GFF2043 at 92.109 kb on - strand, within GFF2043 at 92.346 kb on + strand at 92.347 kb on - strand at 92.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 89,426 + +0.0 89,426 + -0.0 89,426 + +1.3 89,427 - +0.8 89,479 + -0.4 89,479 + +0.0 89,479 + -3.5 89,479 + -0.4 89,479 + +0.1 89,479 + +0.2 89,479 + -0.1 89,479 + -0.6 89,480 - -2.1 89,480 - -0.4 89,480 - +0.4 89,480 - -2.2 89,480 - -1.6 89,551 + +1.3 89,552 - -1.0 89,552 - -0.9 89,552 - -2.6 89,552 - +1.4 89,552 - -1.6 89,659 + GFF2041 0.22 -0.5 89,659 + GFF2041 0.22 -4.4 89,659 + GFF2041 0.22 +0.5 89,659 + GFF2041 0.22 +2.8 89,659 + GFF2041 0.22 +0.5 89,660 - GFF2041 0.22 -2.0 89,660 - GFF2041 0.22 -1.2 89,660 - GFF2041 0.22 -2.9 89,660 - GFF2041 0.22 -0.7 89,749 + GFF2041 0.32 +2.4 89,992 + GFF2041 0.62 +0.4 89,992 + GFF2041 0.62 +0.3 89,993 - GFF2041 0.62 +1.5 89,993 - GFF2041 0.62 +0.5 90,365 + -0.6 90,365 + -0.7 90,365 + -0.8 90,365 + -1.6 90,365 + +2.2 90,365 + +1.1 90,365 + +2.8 90,366 - -1.5 90,366 - +0.6 90,366 - -0.7 90,366 - -1.3 90,366 - +1.9 90,366 - +1.1 90,366 - -0.6 90,447 + +2.1 90,447 + +0.4 90,448 - +0.2 90,448 - -2.7 90,448 - -1.4 90,577 + GFF2042 0.17 -1.2 90,577 + GFF2042 0.17 -1.9 90,577 + GFF2042 0.17 -0.4 90,577 + GFF2042 0.17 +0.1 90,577 + GFF2042 0.17 +2.1 90,577 + GFF2042 0.17 -0.9 90,578 - GFF2042 0.17 -0.2 90,578 - GFF2042 0.17 -1.6 90,578 - GFF2042 0.17 -0.8 90,578 - GFF2042 0.17 +0.8 90,578 - GFF2042 0.17 -2.7 90,578 - GFF2042 0.17 +0.9 90,578 - GFF2042 0.17 +1.7 90,578 - GFF2042 0.17 -1.7 90,578 - GFF2042 0.17 +0.8 90,786 + GFF2042 0.38 -0.7 90,786 + GFF2042 0.38 -1.2 90,786 + GFF2042 0.38 +0.1 90,786 + GFF2042 0.38 -2.6 90,786 + GFF2042 0.38 +2.9 90,786 + GFF2042 0.38 +0.8 90,786 + GFF2042 0.38 +0.8 90,787 - GFF2042 0.38 -0.2 90,787 - GFF2042 0.38 -2.4 90,787 - GFF2042 0.38 -0.8 90,787 - GFF2042 0.38 +0.9 90,787 - GFF2042 0.38 -0.2 90,787 - GFF2042 0.38 -2.7 91,377 + -0.7 91,377 + -0.2 91,378 - -0.7 91,378 - -1.3 91,378 - -1.4 91,433 + -0.2 91,433 + -2.3 91,433 + +0.3 91,433 + -0.4 91,433 + -0.1 91,434 - -0.4 91,434 - -0.2 91,434 - -1.7 91,553 + GFF2043 0.18 -0.7 91,553 + GFF2043 0.18 +0.9 91,607 + GFF2043 0.24 +2.4 91,607 + GFF2043 0.24 -0.1 91,607 + GFF2043 0.24 -2.4 91,607 + GFF2043 0.24 -0.6 91,607 + GFF2043 0.24 +0.8 91,607 + GFF2043 0.24 -0.5 91,607 + GFF2043 0.24 -0.2 91,607 + GFF2043 0.24 -1.4 91,607 + GFF2043 0.24 -1.9 91,608 - GFF2043 0.24 +0.7 91,608 - GFF2043 0.24 -1.3 91,608 - GFF2043 0.24 +0.9 91,608 - GFF2043 0.24 -2.8 91,608 - GFF2043 0.24 -2.0 91,608 - GFF2043 0.24 -0.8 91,608 - GFF2043 0.24 -2.2 91,608 - GFF2043 0.24 +0.3 91,608 - GFF2043 0.24 +0.1 91,608 - GFF2043 0.24 -1.5 91,608 - GFF2043 0.24 +0.0 91,608 - GFF2043 0.24 -2.4 91,608 - GFF2043 0.24 +1.4 91,608 - GFF2043 0.24 -2.9 91,697 + GFF2043 0.35 -2.9 91,697 + GFF2043 0.35 -0.5 91,697 + GFF2043 0.35 -0.0 91,698 - GFF2043 0.35 +1.4 91,698 - GFF2043 0.35 -2.5 91,698 - GFF2043 0.35 -2.4 91,698 - GFF2043 0.35 +1.4 91,698 - GFF2043 0.35 -0.9 91,724 + GFF2043 0.38 -0.6 91,724 + GFF2043 0.38 -3.0 91,724 + GFF2043 0.38 -1.3 91,724 + GFF2043 0.38 -0.4 91,724 + GFF2043 0.38 -1.7 91,937 - GFF2043 0.64 -0.4 91,937 - GFF2043 0.64 -0.2 91,937 - GFF2043 0.64 +0.8 92,108 + GFF2043 0.84 -1.3 92,108 + GFF2043 0.84 -0.6 92,108 + GFF2043 0.84 -1.2 92,108 + GFF2043 0.84 +1.2 92,108 + GFF2043 0.84 +1.8 92,108 + GFF2043 0.84 -1.5 92,109 - GFF2043 0.84 -0.7 92,109 - GFF2043 0.84 +1.3 92,109 - GFF2043 0.84 +0.8 92,109 - GFF2043 0.84 -0.6 92,346 + -0.9 92,347 - -2.2 92,347 - -1.3
Or see this region's nucleotide sequence