Strain Fitness in Variovorax sp. SCN45 around GFF2006

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2005 and GFF2006 are separated by 140 nucleotidesGFF2006 and GFF2007 are separated by 143 nucleotides GFF2005 - Transcriptional regulator, AraC family, at 48,463 to 49,491 GFF2005 GFF2006 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 49,632 to 50,804 GFF2006 GFF2007 - Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16), at 50,948 to 52,627 GFF2007 Position (kb) 49 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 48.788 kb on + strand, within GFF2005at 48.938 kb on + strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.120 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.415 kb on + strandat 49.558 kb on + strandat 49.842 kb on + strand, within GFF2006at 49.842 kb on + strand, within GFF2006at 49.905 kb on + strand, within GFF2006at 49.906 kb on - strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.086 kb on - strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.544 kb on + strand, within GFF2006at 50.682 kb on + strand, within GFF2006at 50.730 kb on + strandat 50.731 kb on - strandat 50.731 kb on - strandat 50.731 kb on - strandat 50.738 kb on - strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.979 kb on - strandat 50.979 kb on - strandat 50.979 kb on - strandat 51.105 kb on - strandat 51.105 kb on - strandat 51.272 kb on + strand, within GFF2007at 51.273 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.356 kb on + strand, within GFF2007at 51.357 kb on - strand, within GFF2007at 51.357 kb on - strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.690 kb on - strand, within GFF2007at 51.753 kb on - strand, within GFF2007

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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48,788 + GFF2005 0.32 -0.7
48,938 + GFF2005 0.46 -1.3
48,939 - GFF2005 0.46 -1.1
48,939 - GFF2005 0.46 +0.1
49,019 + GFF2005 0.54 +0.8
49,019 + GFF2005 0.54 +0.3
49,019 + GFF2005 0.54 -0.4
49,019 + GFF2005 0.54 -2.3
49,020 - GFF2005 0.54 +0.2
49,020 - GFF2005 0.54 -1.5
49,020 - GFF2005 0.54 -1.7
49,020 - GFF2005 0.54 -1.2
49,120 + GFF2005 0.64 -2.0
49,232 + GFF2005 0.75 +3.4
49,232 + GFF2005 0.75 +0.4
49,233 - GFF2005 0.75 -1.2
49,233 - GFF2005 0.75 -1.8
49,415 + +0.0
49,558 + +1.1
49,842 + GFF2006 0.18 +2.2
49,842 + GFF2006 0.18 -2.1
49,905 + GFF2006 0.23 +0.4
49,906 - GFF2006 0.23 +0.0
49,974 + GFF2006 0.29 +0.4
49,974 + GFF2006 0.29 -0.2
49,974 + GFF2006 0.29 -0.2
49,974 + GFF2006 0.29 -1.5
49,974 + GFF2006 0.29 -1.0
49,974 + GFF2006 0.29 -2.4
49,975 - GFF2006 0.29 -0.9
49,975 - GFF2006 0.29 +0.1
49,975 - GFF2006 0.29 -0.6
49,975 - GFF2006 0.29 -0.0
49,975 - GFF2006 0.29 -1.6
49,975 - GFF2006 0.29 -2.6
50,085 + GFF2006 0.39 -0.4
50,085 + GFF2006 0.39 -0.7
50,086 - GFF2006 0.39 +0.5
50,088 + GFF2006 0.39 -1.2
50,088 + GFF2006 0.39 +0.8
50,088 + GFF2006 0.39 -2.6
50,088 + GFF2006 0.39 -0.4
50,088 + GFF2006 0.39 -2.9
50,088 + GFF2006 0.39 -3.5
50,088 + GFF2006 0.39 +0.4
50,088 + GFF2006 0.39 -0.6
50,088 + GFF2006 0.39 -3.3
50,088 + GFF2006 0.39 +2.4
50,089 - GFF2006 0.39 -0.9
50,089 - GFF2006 0.39 -1.3
50,089 - GFF2006 0.39 -2.4
50,089 - GFF2006 0.39 -1.7
50,089 - GFF2006 0.39 +0.6
50,089 - GFF2006 0.39 +1.1
50,089 - GFF2006 0.39 -1.5
50,089 - GFF2006 0.39 +0.5
50,089 - GFF2006 0.39 -3.6
50,089 - GFF2006 0.39 -1.4
50,089 - GFF2006 0.39 -0.8
50,089 - GFF2006 0.39 -3.1
50,151 + GFF2006 0.44 +0.9
50,151 + GFF2006 0.44 -0.7
50,151 + GFF2006 0.44 -0.0
50,152 - GFF2006 0.44 -1.0
50,152 - GFF2006 0.44 -0.2
50,152 - GFF2006 0.44 -1.3
50,511 + GFF2006 0.75 -2.8
50,511 + GFF2006 0.75 -2.7
50,511 + GFF2006 0.75 -0.2
50,511 + GFF2006 0.75 -1.0
50,511 + GFF2006 0.75 -2.6
50,511 + GFF2006 0.75 -1.2
50,511 + GFF2006 0.75 -1.5
50,511 + GFF2006 0.75 -1.2
50,511 + GFF2006 0.75 -0.7
50,511 + GFF2006 0.75 +1.4
50,511 + GFF2006 0.75 +1.5
50,511 + GFF2006 0.75 -2.2
50,511 + GFF2006 0.75 -1.7
50,511 + GFF2006 0.75 -1.3
50,511 + GFF2006 0.75 -1.1
50,511 + GFF2006 0.75 +0.2
50,511 + GFF2006 0.75 -2.0
50,511 + GFF2006 0.75 -3.5
50,512 - GFF2006 0.75 +0.4
50,512 - GFF2006 0.75 -1.6
50,512 - GFF2006 0.75 -1.1
50,512 - GFF2006 0.75 -2.1
50,512 - GFF2006 0.75 -1.6
50,512 - GFF2006 0.75 -2.2
50,512 - GFF2006 0.75 -0.0
50,538 + GFF2006 0.77 -2.7
50,538 + GFF2006 0.77 -2.2
50,538 + GFF2006 0.77 +0.0
50,544 + GFF2006 0.78 -2.4
50,682 + GFF2006 0.90 -3.9
50,730 + +0.1
50,731 - -2.2
50,731 - -0.6
50,731 - -0.7
50,738 - -2.9
50,802 + -1.2
50,802 + -2.4
50,802 + -0.7
50,802 + -1.5
50,802 + +0.7
50,802 + -0.2
50,802 + -1.2
50,802 + -0.6
50,803 - -0.1
50,803 - +0.1
50,803 - +1.3
50,803 - +0.8
50,979 - +0.1
50,979 - -0.4
50,979 - +0.8
51,105 - -0.0
51,105 - +0.7
51,272 + GFF2007 0.19 -0.8
51,273 - GFF2007 0.19 -2.1
51,294 - GFF2007 0.21 +0.5
51,294 - GFF2007 0.21 -1.1
51,294 - GFF2007 0.21 -0.3
51,356 + GFF2007 0.24 -1.8
51,357 - GFF2007 0.24 +1.5
51,357 - GFF2007 0.24 -1.2
51,689 + GFF2007 0.44 -0.7
51,689 + GFF2007 0.44 -0.2
51,689 + GFF2007 0.44 -1.9
51,690 - GFF2007 0.44 +1.4
51,753 - GFF2007 0.48 +1.0

Or see this region's nucleotide sequence