Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1968 and GFF1969 overlap by 4 nucleotides GFF1969 and GFF1970 are separated by 64 nucleotides GFF1970 and GFF1971 are separated by 75 nucleotides GFF1971 and GFF1972 are separated by 17 nucleotides
GFF1968 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 11,189 to 11,995
GFF1968
GFF1969 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 11,992 to 12,828
GFF1969
GFF1970 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 12,893 to 13,876
GFF1970
GFF1971 - Creatinine amidohydrolase (EC 3.5.2.10), at 13,952 to 14,815
GFF1971
GFF1972 - Cytosine deaminase (EC 3.5.4.1), at 14,833 to 16,110
GFF1972
Position (kb) 12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 11.944 kb on - strand at 12.102 kb on - strand, within GFF1969 at 12.130 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.738 kb on - strand, within GFF1969 at 12.933 kb on + strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 13.092 kb on + strand, within GFF1970 at 13.093 kb on - strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.263 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand at 14.485 kb on - strand, within GFF1971 at 14.581 kb on - strand, within GFF1971 at 14.803 kb on - strand at 14.803 kb on - strand at 14.803 kb on - strand at 14.834 kb on + strand at 14.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 11,944 - -0.2 12,102 - GFF1969 0.13 +0.0 12,130 + GFF1969 0.16 -0.0 12,484 + GFF1969 0.59 +2.3 12,484 + GFF1969 0.59 -0.4 12,484 + GFF1969 0.59 +0.1 12,484 + GFF1969 0.59 -1.5 12,484 + GFF1969 0.59 +2.1 12,485 - GFF1969 0.59 -1.2 12,485 - GFF1969 0.59 -1.2 12,485 - GFF1969 0.59 -2.7 12,485 - GFF1969 0.59 +0.1 12,738 - GFF1969 0.89 -0.1 12,933 + +0.4 12,934 - -2.3 12,934 - -1.9 12,934 - -1.8 12,934 - -0.8 12,993 + GFF1970 0.10 -0.7 12,993 + GFF1970 0.10 -0.9 12,993 + GFF1970 0.10 -1.2 12,993 + GFF1970 0.10 -0.8 12,993 + GFF1970 0.10 +0.4 12,993 + GFF1970 0.10 -0.2 12,994 - GFF1970 0.10 -0.9 12,994 - GFF1970 0.10 -0.8 13,092 + GFF1970 0.20 +0.5 13,093 - GFF1970 0.20 -2.5 13,167 + GFF1970 0.28 -2.2 13,167 + GFF1970 0.28 -0.4 13,167 + GFF1970 0.28 -0.8 13,167 + GFF1970 0.28 -1.2 13,168 - GFF1970 0.28 -0.9 13,168 - GFF1970 0.28 -2.0 13,168 - GFF1970 0.28 -0.9 13,263 + GFF1970 0.38 -2.0 13,347 + GFF1970 0.46 -1.4 13,347 + GFF1970 0.46 +0.6 13,347 + GFF1970 0.46 -1.9 13,347 + GFF1970 0.46 +2.4 13,401 + GFF1970 0.52 -1.1 13,401 + GFF1970 0.52 -0.3 13,402 - GFF1970 0.52 +0.2 13,402 - GFF1970 0.52 -1.8 13,713 + GFF1970 0.83 +0.6 13,713 + GFF1970 0.83 -1.5 13,713 + GFF1970 0.83 -0.6 13,713 + GFF1970 0.83 -2.7 13,713 + GFF1970 0.83 -1.3 13,714 - GFF1970 0.83 -0.7 13,714 - GFF1970 0.83 +0.2 13,722 + GFF1970 0.84 +1.6 13,722 + GFF1970 0.84 -0.8 13,722 + GFF1970 0.84 -1.3 13,722 + GFF1970 0.84 -1.5 13,722 + GFF1970 0.84 +1.1 13,723 - GFF1970 0.84 -2.1 13,723 - GFF1970 0.84 -0.6 13,723 - GFF1970 0.84 +1.0 13,723 - GFF1970 0.84 -1.7 13,723 - GFF1970 0.84 -0.9 13,723 - GFF1970 0.84 -0.9 13,723 - GFF1970 0.84 -0.9 13,746 + GFF1970 0.87 -0.2 13,746 + GFF1970 0.87 +0.4 13,746 + GFF1970 0.87 -0.7 13,746 + GFF1970 0.87 -0.7 13,747 - GFF1970 0.87 -0.2 13,747 - GFF1970 0.87 +1.4 13,747 - GFF1970 0.87 -0.0 13,774 - GFF1970 0.90 -0.3 13,774 - GFF1970 0.90 -0.8 13,774 - GFF1970 0.90 -0.6 13,788 + -1.1 13,788 + -0.4 13,788 + +0.6 13,788 + -0.7 13,788 + -2.3 13,788 + -0.5 13,788 + +0.4 13,788 + -2.3 13,789 - -0.6 13,789 - -2.0 13,789 - +0.2 13,789 - -0.6 14,485 - GFF1971 0.62 -1.7 14,581 - GFF1971 0.73 -3.9 14,803 - -0.7 14,803 - -2.9 14,803 - -3.9 14,834 + +0.1 14,835 - -1.0
Or see this region's nucleotide sequence