Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1883 and GFF1884 are separated by 11 nucleotides GFF1884 and GFF1885 are separated by 0 nucleotides GFF1885 and GFF1886 are separated by 124 nucleotides
GFF1883 - putative signal-transduction protein with CBS domains, at 558,101 to 558,538
GFF1883
GFF1884 - Gluconokinase (EC 2.7.1.12), at 558,550 to 559,071
GFF1884
GFF1885 - Gluconate transporter family protein, at 559,072 to 560,454
GFF1885
GFF1886 - Elongation factor G-like protein TM_1651, at 560,579 to 562,639
GFF1886
Position (kb) 559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 558.874 kb on + strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 559.070 kb on - strand at 559.070 kb on - strand at 559.285 kb on + strand, within GFF1885 at 559.285 kb on + strand, within GFF1885 at 559.286 kb on - strand, within GFF1885 at 559.286 kb on - strand, within GFF1885 at 560.277 kb on - strand, within GFF1885 at 560.347 kb on + strand at 560.348 kb on - strand at 560.957 kb on + strand, within GFF1886 at 560.957 kb on + strand, within GFF1886 at 560.958 kb on - strand, within GFF1886 at 561.222 kb on - strand, within GFF1886
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 558,874 + GFF1884 0.62 +0.9 558,875 - GFF1884 0.62 +0.1 558,875 - GFF1884 0.62 +0.7 559,070 - -0.1 559,070 - -1.0 559,285 + GFF1885 0.15 -2.6 559,285 + GFF1885 0.15 -1.0 559,286 - GFF1885 0.15 -1.8 559,286 - GFF1885 0.15 -3.0 560,277 - GFF1885 0.87 -0.4 560,347 + -2.0 560,348 - -1.3 560,957 + GFF1886 0.18 +0.8 560,957 + GFF1886 0.18 -0.4 560,958 - GFF1886 0.18 -2.2 561,222 - GFF1886 0.31 -2.9
Or see this region's nucleotide sequence