Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1780 and GFF1781 are separated by 158 nucleotides GFF1781 and GFF1782 overlap by 4 nucleotides GFF1782 and GFF1783 are separated by 99 nucleotides
GFF1780 - hypothetical protein, at 440,757 to 441,890
GFF1780
GFF1781 - Two-component transcriptional response regulator, LuxR family, at 442,049 to 442,732
GFF1781
GFF1782 - integral membrane sensor signal transduction histidine kinase, at 442,729 to 444,156
GFF1782
GFF1783 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 444,256 to 445,152
GFF1783
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.998 kb on + strand at 441.998 kb on + strand at 441.998 kb on + strand at 442.263 kb on + strand, within GFF1781 at 442.263 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.341 kb on - strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.664 kb on - strand at 442.664 kb on - strand at 443.233 kb on + strand, within GFF1782 at 443.242 kb on + strand, within GFF1782 at 443.243 kb on - strand, within GFF1782 at 443.246 kb on - strand, within GFF1782 at 443.246 kb on - strand, within GFF1782 at 443.384 kb on - strand, within GFF1782 at 443.384 kb on - strand, within GFF1782 at 443.851 kb on + strand, within GFF1782 at 443.851 kb on + strand, within GFF1782 at 443.852 kb on - strand, within GFF1782 at 444.221 kb on + strand at 444.221 kb on + strand at 444.222 kb on - strand at 444.222 kb on - strand at 444.226 kb on + strand at 444.226 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.299 kb on - strand at 444.299 kb on - strand at 444.299 kb on - strand at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.389 kb on - strand, within GFF1783 at 444.389 kb on - strand, within GFF1783 at 444.419 kb on - strand, within GFF1783 at 444.584 kb on - strand, within GFF1783 at 444.584 kb on - strand, within GFF1783 at 444.595 kb on + strand, within GFF1783 at 444.749 kb on - strand, within GFF1783 at 444.787 kb on + strand, within GFF1783 at 444.788 kb on - strand, within GFF1783 at 444.788 kb on - strand, within GFF1783 at 444.928 kb on + strand, within GFF1783 at 444.929 kb on - strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.045 kb on + strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.096 kb on + strand at 445.096 kb on + strand at 445.096 kb on + strand at 445.096 kb on + strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.100 kb on - strand at 445.100 kb on - strand at 445.150 kb on + strand at 445.150 kb on + strand at 445.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 441,903 + -1.2 441,903 + -0.7 441,903 + +0.8 441,903 + -0.7 441,907 + -1.4 441,907 + +1.4 441,907 + -1.4 441,908 - -0.0 441,908 - -1.7 441,908 - -0.6 441,908 - -0.5 441,998 + +2.4 441,998 + -1.0 441,998 + +0.4 442,263 + GFF1781 0.31 -1.0 442,263 + GFF1781 0.31 -0.4 442,340 + GFF1781 0.43 -0.8 442,340 + GFF1781 0.43 -0.7 442,341 - GFF1781 0.43 +0.8 442,406 + GFF1781 0.52 -2.3 442,406 + GFF1781 0.52 -2.4 442,627 + GFF1781 0.85 -1.4 442,627 + GFF1781 0.85 +0.7 442,627 + GFF1781 0.85 -0.1 442,627 + GFF1781 0.85 -0.7 442,628 - GFF1781 0.85 -1.2 442,628 - GFF1781 0.85 -3.5 442,628 - GFF1781 0.85 +0.8 442,661 + GFF1781 0.89 -0.6 442,661 + GFF1781 0.89 +0.1 442,661 + GFF1781 0.89 +1.3 442,661 + GFF1781 0.89 +0.1 442,661 + GFF1781 0.89 -1.7 442,662 - GFF1781 0.90 +0.0 442,662 - GFF1781 0.90 +0.4 442,662 - GFF1781 0.90 +0.8 442,662 - GFF1781 0.90 -2.0 442,664 - -1.0 442,664 - +1.7 443,233 + GFF1782 0.35 -2.7 443,242 + GFF1782 0.36 -1.2 443,243 - GFF1782 0.36 -2.5 443,246 - GFF1782 0.36 -3.8 443,246 - GFF1782 0.36 -3.1 443,384 - GFF1782 0.46 -0.4 443,384 - GFF1782 0.46 -1.5 443,851 + GFF1782 0.79 -1.4 443,851 + GFF1782 0.79 -1.5 443,852 - GFF1782 0.79 -0.4 444,221 + -1.8 444,221 + -1.5 444,222 - -0.2 444,222 - -1.8 444,226 + +0.5 444,226 + +2.9 444,298 + -4.0 444,298 + -1.0 444,298 + -0.4 444,298 + +0.6 444,298 + -0.5 444,299 - +0.0 444,299 - +1.7 444,299 - +0.0 444,388 + GFF1783 0.15 -2.8 444,388 + GFF1783 0.15 -0.6 444,388 + GFF1783 0.15 -0.2 444,388 + GFF1783 0.15 -0.2 444,389 - GFF1783 0.15 -2.5 444,389 - GFF1783 0.15 -2.9 444,419 - GFF1783 0.18 -1.0 444,584 - GFF1783 0.37 +1.4 444,584 - GFF1783 0.37 +0.1 444,595 + GFF1783 0.38 -0.6 444,749 - GFF1783 0.55 -2.6 444,787 + GFF1783 0.59 -2.9 444,788 - GFF1783 0.59 -1.4 444,788 - GFF1783 0.59 -0.8 444,928 + GFF1783 0.75 +0.5 444,929 - GFF1783 0.75 -2.0 445,039 + GFF1783 0.87 -2.6 445,039 + GFF1783 0.87 -0.8 445,039 + GFF1783 0.87 -1.2 445,039 + GFF1783 0.87 -0.3 445,039 + GFF1783 0.87 -2.1 445,039 + GFF1783 0.87 +2.6 445,040 - GFF1783 0.87 +0.7 445,040 - GFF1783 0.87 -0.8 445,040 - GFF1783 0.87 -2.3 445,045 + GFF1783 0.88 -2.9 445,046 - GFF1783 0.88 -0.8 445,046 - GFF1783 0.88 -1.7 445,046 - GFF1783 0.88 -1.6 445,046 - GFF1783 0.88 -1.4 445,046 - GFF1783 0.88 +1.4 445,096 + +0.1 445,096 + -1.5 445,096 + +1.8 445,096 + -1.4 445,097 - +0.9 445,097 - -0.2 445,097 - -3.0 445,097 - +0.4 445,099 + +2.7 445,099 + +0.1 445,099 + -2.6 445,099 + -1.4 445,100 - -0.6 445,100 - -0.4 445,150 + -0.2 445,150 + -1.1 445,150 + -0.9
Or see this region's nucleotide sequence