Strain Fitness in Variovorax sp. SCN45 around GFF176

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF174 and GFF175 are separated by 36 nucleotidesGFF175 and GFF176 overlap by 1 nucleotidesGFF176 and GFF177 overlap by 4 nucleotidesGFF177 and GFF178 are separated by 39 nucleotides GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258 GFF174 GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960 GFF175 GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619 GFF176 GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386 GFF177 GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637 GFF178 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 206.176 kb on - strandat 206.176 kb on - strandat 206.334 kb on + strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.430 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.844 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.928 kb on + strandat 206.928 kb on + strandat 206.928 kb on + strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.996 kb on + strandat 206.997 kb on - strandat 207.173 kb on + strand, within GFF176at 207.173 kb on + strand, within GFF176at 207.174 kb on - strand, within GFF176at 207.185 kb on + strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.266 kb on + strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.591 kb on + strandat 207.591 kb on + strandat 207.591 kb on + strandat 207.664 kb on + strandat 207.664 kb on + strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.686 kb on - strandat 208.170 kb on - strand, within GFF177at 208.170 kb on - strand, within GFF177at 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.419 kb on - strandat 208.562 kb on - strand, within GFF178

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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206,176 - -1.8
206,176 - +0.7
206,334 + +0.2
206,335 - +1.8
206,335 - -0.5
206,430 + GFF175 0.20 -1.0
206,456 + GFF175 0.24 +0.0
206,456 + GFF175 0.24 -0.8
206,457 - GFF175 0.24 -0.3
206,457 - GFF175 0.24 -0.5
206,457 - GFF175 0.24 +1.0
206,466 + GFF175 0.26 -0.5
206,466 + GFF175 0.26 -1.0
206,466 + GFF175 0.26 -0.4
206,466 + GFF175 0.26 -1.2
206,467 - GFF175 0.26 -1.0
206,467 - GFF175 0.26 +2.9
206,467 - GFF175 0.26 +0.2
206,467 - GFF175 0.26 -1.2
206,517 + GFF175 0.33 -0.5
206,517 + GFF175 0.33 -1.2
206,518 - GFF175 0.33 -2.3
206,518 - GFF175 0.33 -3.0
206,601 + GFF175 0.46 +1.4
206,601 + GFF175 0.46 -1.2
206,601 + GFF175 0.46 -2.7
206,602 - GFF175 0.46 -1.3
206,602 - GFF175 0.46 -2.9
206,602 - GFF175 0.46 +0.4
206,602 - GFF175 0.46 +0.6
206,844 + GFF175 0.82 +0.1
206,883 + GFF175 0.88 -0.2
206,883 + GFF175 0.88 -0.1
206,883 + GFF175 0.88 -1.8
206,883 + GFF175 0.88 -0.8
206,883 + GFF175 0.88 -0.0
206,884 - GFF175 0.88 -2.9
206,884 - GFF175 0.88 -3.1
206,884 - GFF175 0.88 -0.5
206,884 - GFF175 0.88 +0.1
206,884 - GFF175 0.88 -1.2
206,884 - GFF175 0.88 -2.0
206,884 - GFF175 0.88 -0.8
206,928 + -0.0
206,928 + -1.4
206,928 + -2.3
206,929 - +0.5
206,929 - +1.5
206,929 - -2.3
206,929 - -0.8
206,929 - -0.1
206,996 + -0.8
206,997 - -0.9
207,173 + GFF176 0.32 -2.3
207,173 + GFF176 0.32 -2.9
207,174 - GFF176 0.32 -0.3
207,185 + GFF176 0.34 -0.6
207,186 - GFF176 0.34 -1.2
207,186 - GFF176 0.34 +1.8
207,186 - GFF176 0.34 -1.8
207,186 - GFF176 0.34 -0.9
207,266 + GFF176 0.46 -0.1
207,267 - GFF176 0.47 +1.1
207,267 - GFF176 0.47 -0.4
207,548 + GFF176 0.89 -0.3
207,548 + GFF176 0.89 +2.3
207,549 - GFF176 0.89 +1.7
207,549 - GFF176 0.89 +0.3
207,591 + +0.5
207,591 + -1.0
207,591 + -2.8
207,664 + -0.5
207,664 + -1.0
207,665 - -2.7
207,665 - +1.4
207,665 - +2.5
207,665 - -1.1
207,685 + -0.6
207,685 + +0.6
207,685 + +1.2
207,685 + -0.8
207,686 - -0.8
208,170 - GFF177 0.72 -0.3
208,170 - GFF177 0.72 -0.1
208,418 + -0.8
208,418 + -2.3
208,418 + -0.8
208,418 + -1.6
208,419 - -0.4
208,562 - GFF178 0.11 -0.9

Or see this region's nucleotide sequence