Strain Fitness in Variovorax sp. SCN45 around GFF17

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
17,549	+		GFF16	0.71	+1.0
17,549	+		GFF16	0.71	-2.2
17,633	+		GFF16	0.73	-1.4
17,633	+		GFF16	0.73	+0.2
17,642	+		GFF16	0.73	+0.8
17,642	+		GFF16	0.73	-2.6
17,642	+		GFF16	0.73	+0.2
17,642	+		GFF16	0.73	+0.2
17,643	-		GFF16	0.73	-2.0
17,643	-		GFF16	0.73	+0.1
17,643	-		GFF16	0.73	-1.1
17,844	-		GFF16	0.79	+0.6
17,844	-		GFF16	0.79	-2.6
17,957	+		GFF16	0.83	+0.2
17,957	+		GFF16	0.83	-1.3
17,957	+		GFF16	0.83	+0.2
17,957	+		GFF16	0.83	+1.8
17,958	-		GFF16	0.83	+0.9
17,958	-		GFF16	0.83	-0.5
18,045	-		GFF16	0.85	-1.2
18,183	-		GFF16	0.89	-3.1
18,183	-		GFF16	0.89	-0.3
18,411	-				-2.6
18,578	-				+0.2
18,653	-				-2.3
18,727	+		GFF17	0.15	-1.7
18,727	+		GFF17	0.15	-1.8
18,728	-		GFF17	0.15	-3.6
18,728	-		GFF17	0.15	+1.3
18,730	+		GFF17	0.15	-1.2
18,731	-		GFF17	0.15	-0.8
18,731	-		GFF17	0.15	-0.8
18,990	+		GFF17	0.35	+0.2
19,213	+		GFF17	0.53	+1.6
19,285	+		GFF17	0.59	-1.4
19,892	-				-4.5
19,892	-				-0.8
20,026	+		GFF18	0.11	+0.8
20,500	+		GFF18	0.48	-0.6
20,500	+		GFF18	0.48	-0.6
20,500	+		GFF18	0.48	-0.8
20,501	-		GFF18	0.48	-1.4