Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1642 and GFF1643 are separated by 4 nucleotides GFF1643 and GFF1644 are separated by 205 nucleotides GFF1644 and GFF1645 are separated by 25 nucleotides GFF1645 and GFF1646 are separated by 174 nucleotides GFF1646 and GFF1647 overlap by 49 nucleotides
GFF1642 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 283,651 to 284,391
GFF1642
GFF1643 - MbtH-like NRPS chaperone, at 284,396 to 284,644
GFF1643
GFF1644 - hypothetical protein, at 284,850 to 285,110
GFF1644
GFF1645 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 285,136 to 285,666
GFF1645
GFF1646 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,841 to 286,011
GFF1646
GFF1647 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,963 to 288,191
GFF1647
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.638 kb on + strand at 284.638 kb on + strand at 284.638 kb on + strand at 284.714 kb on + strand at 284.715 kb on - strand at 284.742 kb on + strand at 284.742 kb on + strand at 284.742 kb on + strand at 284.951 kb on - strand, within GFF1644 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.404 kb on + strand, within GFF1645 at 285.405 kb on - strand, within GFF1645 at 285.405 kb on - strand, within GFF1645 at 285.443 kb on + strand, within GFF1645 at 285.479 kb on + strand, within GFF1645 at 285.479 kb on + strand, within GFF1645 at 285.480 kb on - strand, within GFF1645 at 285.533 kb on + strand, within GFF1645 at 285.670 kb on + strand at 285.671 kb on - strand at 285.769 kb on + strand at 285.774 kb on + strand at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.883 kb on + strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.884 kb on - strand, within GFF1646 at 285.929 kb on + strand, within GFF1646 at 285.930 kb on - strand, within GFF1646 at 286.028 kb on + strand at 286.028 kb on + strand at 286.028 kb on + strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.029 kb on - strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.042 kb on + strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.043 kb on - strand at 286.075 kb on + strand at 286.075 kb on + strand at 286.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 284,333 + -3.7 284,333 + -1.3 284,333 + -0.1 284,333 + +0.1 284,333 + +0.3 284,333 + -2.0 284,333 + -2.2 284,334 - +2.5 284,334 - -1.4 284,334 - -1.1 284,334 - -1.4 284,334 - +0.6 284,334 - -1.5 284,334 - -2.3 284,486 + GFF1643 0.36 -1.4 284,486 + GFF1643 0.36 -1.9 284,486 + GFF1643 0.36 -1.3 284,486 + GFF1643 0.36 -0.9 284,486 + GFF1643 0.36 -0.6 284,487 - GFF1643 0.37 +0.9 284,487 - GFF1643 0.37 -1.5 284,490 + GFF1643 0.38 -0.4 284,490 + GFF1643 0.38 -0.6 284,491 - GFF1643 0.38 -1.5 284,491 - GFF1643 0.38 -0.3 284,577 + GFF1643 0.73 -1.4 284,577 + GFF1643 0.73 +0.4 284,577 + GFF1643 0.73 +0.7 284,638 + -0.8 284,638 + -2.3 284,638 + -1.6 284,714 + -1.2 284,715 - -2.4 284,742 + +0.9 284,742 + -0.6 284,742 + +1.6 284,951 - GFF1644 0.39 -2.5 285,404 + GFF1645 0.50 +0.2 285,404 + GFF1645 0.50 -1.5 285,404 + GFF1645 0.50 -1.4 285,404 + GFF1645 0.50 +0.4 285,405 - GFF1645 0.51 -1.4 285,405 - GFF1645 0.51 -0.6 285,443 + GFF1645 0.58 +1.5 285,479 + GFF1645 0.65 -1.9 285,479 + GFF1645 0.65 +3.6 285,480 - GFF1645 0.65 -0.7 285,533 + GFF1645 0.75 +1.5 285,670 + +3.4 285,671 - -0.5 285,769 + -0.1 285,774 + +2.5 285,883 + GFF1646 0.25 -1.8 285,883 + GFF1646 0.25 -2.6 285,883 + GFF1646 0.25 +0.8 285,883 + GFF1646 0.25 -2.7 285,883 + GFF1646 0.25 -2.0 285,883 + GFF1646 0.25 +0.2 285,883 + GFF1646 0.25 +1.3 285,883 + GFF1646 0.25 +0.5 285,884 - GFF1646 0.25 +2.3 285,884 - GFF1646 0.25 +0.9 285,884 - GFF1646 0.25 +1.0 285,884 - GFF1646 0.25 -0.7 285,929 + GFF1646 0.51 +1.5 285,930 - GFF1646 0.52 -2.1 286,028 + -0.1 286,028 + +0.6 286,028 + -0.7 286,029 - +1.5 286,029 - +0.8 286,029 - -2.0 286,029 - -0.5 286,042 + -0.0 286,042 + +0.0 286,042 + -0.8 286,042 + -2.0 286,042 + -1.1 286,042 + -0.2 286,042 + +0.2 286,042 + -1.8 286,042 + -1.7 286,043 - -0.4 286,043 - -1.5 286,043 - -2.2 286,043 - +0.5 286,075 + -1.2 286,075 + +0.2 286,076 - -0.5
Or see this region's nucleotide sequence