Strain Fitness in Variovorax sp. SCN45 around GFF1499

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1497 and GFF1498 overlap by 4 nucleotidesGFF1498 and GFF1499 are separated by 6 nucleotidesGFF1499 and GFF1500 are separated by 130 nucleotides GFF1497 - BUG/TctC family periplasmic protein, at 89,847 to 90,833 GFF1497 GFF1498 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 90,830 to 91,750 GFF1498 GFF1499 - BUG/TctC family periplasmic protein, at 91,757 to 92,743 GFF1499 GFF1500 - Transcriptional regulator, IclR family, at 92,874 to 93,683 GFF1500 Position (kb) 91 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 90.870 kb on + strandat 90.870 kb on + strandat 90.871 kb on - strandat 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.214 kb on + strand, within GFF1498at 91.509 kb on + strand, within GFF1498at 91.509 kb on + strand, within GFF1498at 92.001 kb on + strand, within GFF1499at 92.001 kb on + strand, within GFF1499at 92.001 kb on + strand, within GFF1499at 92.002 kb on - strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.178 kb on + strand, within GFF1499at 92.178 kb on + strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.265 kb on + strand, within GFF1499at 92.404 kb on - strand, within GFF1499at 92.419 kb on - strand, within GFF1499at 92.469 kb on + strand, within GFF1499at 92.470 kb on - strand, within GFF1499at 92.653 kb on - strandat 92.653 kb on - strandat 92.737 kb on + strandat 92.737 kb on + strandat 92.737 kb on + strandat 92.738 kb on - strandat 92.826 kb on + strandat 92.826 kb on + strandat 92.826 kb on + strandat 92.826 kb on + strandat 92.827 kb on - strandat 92.827 kb on - strandat 93.117 kb on + strand, within GFF1500at 93.117 kb on + strand, within GFF1500at 93.118 kb on - strand, within GFF1500at 93.118 kb on - strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.267 kb on + strand, within GFF1500at 93.268 kb on - strand, within GFF1500at 93.268 kb on - strand, within GFF1500at 93.268 kb on - strand, within GFF1500at 93.420 kb on + strand, within GFF1500at 93.420 kb on + strand, within GFF1500at 93.420 kb on + strand, within GFF1500at 93.421 kb on - strand, within GFF1500at 93.421 kb on - strand, within GFF1500at 93.444 kb on + strand, within GFF1500at 93.444 kb on + strand, within GFF1500at 93.445 kb on - strand, within GFF1500at 93.445 kb on - strand, within GFF1500at 93.445 kb on - strand, within GFF1500at 93.445 kb on - strand, within GFF1500at 93.445 kb on - strand, within GFF1500at 93.621 kb on + strandat 93.622 kb on - strandat 93.681 kb on + strandat 93.682 kb on - strandat 93.682 kb on - strandat 93.682 kb on - strandat 93.682 kb on - strandat 93.682 kb on - strandat 93.682 kb on - strandat 93.727 kb on - strandat 93.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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90,870 + +0.4
90,870 + -1.0
90,871 - -3.4
91,104 + GFF1498 0.30 +2.4
91,104 + GFF1498 0.30 +0.5
91,104 + GFF1498 0.30 -0.1
91,104 + GFF1498 0.30 -1.5
91,105 - GFF1498 0.30 -0.9
91,105 - GFF1498 0.30 +1.4
91,105 - GFF1498 0.30 +0.4
91,214 + GFF1498 0.42 +0.8
91,509 + GFF1498 0.74 -0.4
91,509 + GFF1498 0.74 -1.9
92,001 + GFF1499 0.25 -0.4
92,001 + GFF1499 0.25 +0.6
92,001 + GFF1499 0.25 -1.1
92,002 - GFF1499 0.25 -1.4
92,124 + GFF1499 0.37 -0.7
92,124 + GFF1499 0.37 -2.4
92,124 + GFF1499 0.37 -1.6
92,124 + GFF1499 0.37 +0.6
92,124 + GFF1499 0.37 -2.8
92,124 + GFF1499 0.37 -1.3
92,124 + GFF1499 0.37 -0.2
92,124 + GFF1499 0.37 -2.3
92,124 + GFF1499 0.37 +1.2
92,124 + GFF1499 0.37 +1.3
92,124 + GFF1499 0.37 +1.1
92,124 + GFF1499 0.37 -1.3
92,124 + GFF1499 0.37 -1.0
92,124 + GFF1499 0.37 +1.1
92,124 + GFF1499 0.37 -2.7
92,125 - GFF1499 0.37 -0.2
92,125 - GFF1499 0.37 -0.1
92,125 - GFF1499 0.37 +0.0
92,125 - GFF1499 0.37 -2.7
92,125 - GFF1499 0.37 +1.2
92,125 - GFF1499 0.37 +1.0
92,125 - GFF1499 0.37 +0.9
92,125 - GFF1499 0.37 +1.8
92,178 + GFF1499 0.43 +1.8
92,178 + GFF1499 0.43 -1.0
92,179 - GFF1499 0.43 +0.3
92,179 - GFF1499 0.43 +0.2
92,179 - GFF1499 0.43 +1.2
92,265 + GFF1499 0.51 +2.8
92,404 - GFF1499 0.66 +1.6
92,419 - GFF1499 0.67 -1.0
92,469 + GFF1499 0.72 -0.1
92,470 - GFF1499 0.72 -1.1
92,653 - +0.1
92,653 - +0.3
92,737 + +1.1
92,737 + -2.1
92,737 + -1.0
92,738 - -1.3
92,826 + -3.8
92,826 + +2.2
92,826 + -0.6
92,826 + -0.4
92,827 - +1.7
92,827 - -0.6
93,117 + GFF1500 0.30 -4.3
93,117 + GFF1500 0.30 -1.7
93,118 - GFF1500 0.30 -0.7
93,118 - GFF1500 0.30 +0.0
93,267 + GFF1500 0.49 +2.7
93,267 + GFF1500 0.49 -1.7
93,267 + GFF1500 0.49 -2.1
93,267 + GFF1500 0.49 +1.6
93,267 + GFF1500 0.49 -0.4
93,267 + GFF1500 0.49 -1.5
93,268 - GFF1500 0.49 +0.7
93,268 - GFF1500 0.49 +1.0
93,268 - GFF1500 0.49 -1.6
93,420 + GFF1500 0.67 -1.5
93,420 + GFF1500 0.67 +0.2
93,420 + GFF1500 0.67 +0.3
93,421 - GFF1500 0.68 +0.8
93,421 - GFF1500 0.68 -0.4
93,444 + GFF1500 0.70 +0.2
93,444 + GFF1500 0.70 -1.4
93,445 - GFF1500 0.70 +1.2
93,445 - GFF1500 0.70 -0.8
93,445 - GFF1500 0.70 +1.6
93,445 - GFF1500 0.70 -1.3
93,445 - GFF1500 0.70 +2.7
93,621 + -1.0
93,622 - -0.1
93,681 + -1.4
93,682 - -1.1
93,682 - -0.0
93,682 - +0.4
93,682 - -0.4
93,682 - +2.4
93,682 - -1.5
93,727 - +0.9
93,727 - -0.4

Or see this region's nucleotide sequence