Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1423 and GFF1424 overlap by 4 nucleotides GFF1424 and GFF1425 overlap by 1 nucleotides GFF1425 and GFF1426 are separated by 10 nucleotides GFF1426 and GFF1427 are separated by 7 nucleotides
GFF1423 - Phenylacetate ABC transporter, permease protein 1, at 14,424 to 15,296
GFF1423
GFF1424 - Phenylacetate ABC transporter, permease protein 2, at 15,293 to 16,225
GFF1424
GFF1425 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 16,225 to 16,974
GFF1425
GFF1426 - Phenylacetate ABC transporter, ATP-binding protein 2, at 16,985 to 17,704
GFF1426
GFF1427 - Mandelate racemase (EC 5.1.2.2), at 17,712 to 18,788
GFF1427
Position (kb) 16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 15.292 kb on + strand at 15.292 kb on + strand at 15.293 kb on - strand at 15.764 kb on + strand, within GFF1424 at 15.764 kb on + strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.968 kb on + strand, within GFF1424 at 15.968 kb on + strand, within GFF1424 at 15.969 kb on - strand, within GFF1424 at 15.969 kb on - strand, within GFF1424 at 16.125 kb on - strand, within GFF1424 at 16.125 kb on - strand, within GFF1424 at 16.235 kb on + strand at 16.236 kb on - strand at 16.236 kb on - strand at 16.988 kb on + strand at 17.351 kb on + strand, within GFF1426 at 17.352 kb on - strand, within GFF1426 at 17.352 kb on - strand, within GFF1426 at 17.352 kb on - strand, within GFF1426 at 17.352 kb on - strand, within GFF1426 at 17.612 kb on + strand, within GFF1426 at 17.612 kb on + strand, within GFF1426 at 17.612 kb on + strand, within GFF1426 at 17.613 kb on - strand, within GFF1426 at 17.690 kb on + strand at 17.690 kb on + strand at 17.822 kb on - strand, within GFF1427 at 17.859 kb on + strand, within GFF1427 at 17.859 kb on + strand, within GFF1427 at 17.860 kb on - strand, within GFF1427 at 17.860 kb on - strand, within GFF1427 at 17.860 kb on - strand, within GFF1427 at 17.872 kb on - strand, within GFF1427 at 17.967 kb on + strand, within GFF1427 at 17.968 kb on - strand, within GFF1427
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 15,292 + -3.2 15,292 + -2.1 15,293 - +1.7 15,764 + GFF1424 0.50 +0.3 15,764 + GFF1424 0.50 -1.9 15,765 - GFF1424 0.51 -1.9 15,765 - GFF1424 0.51 -3.8 15,765 - GFF1424 0.51 -2.5 15,818 + GFF1424 0.56 +0.2 15,818 + GFF1424 0.56 -0.7 15,818 + GFF1424 0.56 +0.6 15,818 + GFF1424 0.56 -0.4 15,968 + GFF1424 0.72 +0.3 15,968 + GFF1424 0.72 -0.7 15,969 - GFF1424 0.72 +3.2 15,969 - GFF1424 0.72 -0.8 16,125 - GFF1424 0.89 +0.9 16,125 - GFF1424 0.89 -2.2 16,235 + +1.2 16,236 - +0.7 16,236 - -1.9 16,988 + +1.2 17,351 + GFF1426 0.51 -0.6 17,352 - GFF1426 0.51 +2.3 17,352 - GFF1426 0.51 -1.4 17,352 - GFF1426 0.51 +2.4 17,352 - GFF1426 0.51 +0.1 17,612 + GFF1426 0.87 +2.5 17,612 + GFF1426 0.87 +0.7 17,612 + GFF1426 0.87 +1.1 17,613 - GFF1426 0.87 +0.3 17,690 + -1.8 17,690 + +0.1 17,822 - GFF1427 0.10 +0.7 17,859 + GFF1427 0.14 -0.3 17,859 + GFF1427 0.14 -1.6 17,860 - GFF1427 0.14 +2.4 17,860 - GFF1427 0.14 +0.9 17,860 - GFF1427 0.14 +0.1 17,872 - GFF1427 0.15 -0.0 17,967 + GFF1427 0.24 +1.5 17,968 - GFF1427 0.24 +0.7
Or see this region's nucleotide sequence