Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1422 and GFF1423 overlap by 8 nucleotides GFF1423 and GFF1424 overlap by 4 nucleotides GFF1424 and GFF1425 overlap by 1 nucleotides
GFF1422 - L-lactate dehydrogenase, at 13,271 to 14,431
GFF1422
GFF1423 - Phenylacetate ABC transporter, permease protein 1, at 14,424 to 15,296
GFF1423
GFF1424 - Phenylacetate ABC transporter, permease protein 2, at 15,293 to 16,225
GFF1424
GFF1425 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 16,225 to 16,974
GFF1425
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.830 kb on + strand, within GFF1422 at 14.399 kb on + strand at 14.508 kb on + strand at 14.508 kb on + strand at 14.508 kb on + strand at 14.509 kb on - strand at 15.063 kb on + strand, within GFF1423 at 15.189 kb on + strand, within GFF1423 at 15.190 kb on - strand, within GFF1423 at 15.204 kb on + strand, within GFF1423 at 15.292 kb on + strand at 15.292 kb on + strand at 15.293 kb on - strand at 15.764 kb on + strand, within GFF1424 at 15.764 kb on + strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.765 kb on - strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.818 kb on + strand, within GFF1424 at 15.968 kb on + strand, within GFF1424 at 15.968 kb on + strand, within GFF1424 at 15.969 kb on - strand, within GFF1424 at 15.969 kb on - strand, within GFF1424 at 16.125 kb on - strand, within GFF1424 at 16.125 kb on - strand, within GFF1424 at 16.235 kb on + strand at 16.236 kb on - strand at 16.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 13,830 + GFF1422 0.48 +0.9 14,399 + -0.9 14,508 + +1.9 14,508 + +0.4 14,508 + -0.7 14,509 - +0.3 15,063 + GFF1423 0.73 -0.2 15,189 + GFF1423 0.88 -2.6 15,190 - GFF1423 0.88 -1.7 15,204 + GFF1423 0.89 -1.3 15,292 + -3.2 15,292 + -2.1 15,293 - +1.7 15,764 + GFF1424 0.50 +0.3 15,764 + GFF1424 0.50 -1.9 15,765 - GFF1424 0.51 -1.9 15,765 - GFF1424 0.51 -3.8 15,765 - GFF1424 0.51 -2.5 15,818 + GFF1424 0.56 +0.2 15,818 + GFF1424 0.56 -0.7 15,818 + GFF1424 0.56 +0.6 15,818 + GFF1424 0.56 -0.4 15,968 + GFF1424 0.72 +0.3 15,968 + GFF1424 0.72 -0.7 15,969 - GFF1424 0.72 +3.2 15,969 - GFF1424 0.72 -0.8 16,125 - GFF1424 0.89 +0.9 16,125 - GFF1424 0.89 -2.2 16,235 + +1.2 16,236 - +0.7 16,236 - -1.9
Or see this region's nucleotide sequence