Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF122 and GFF123 overlap by 8 nucleotides GFF123 and GFF124 are separated by 16 nucleotides GFF124 and GFF125 overlap by 4 nucleotides
GFF122 - Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1), at 150,815 to 151,690
GFF122
GFF123 - Dihydroorotate dehydrogenase (NAD(+)), catalytic subunit (EC 1.3.1.14), at 151,683 to 152,633
GFF123
GFF124 - Beta-ureidopropionase (EC 3.5.1.6), at 152,650 to 153,930
GFF124
GFF125 - Dihydroorotase (EC 3.5.2.3), at 153,927 to 154,979
GFF125
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.764 kb on + strand at 151.915 kb on - strand, within GFF123 at 151.917 kb on + strand, within GFF123 at 151.941 kb on + strand, within GFF123 at 152.115 kb on + strand, within GFF123 at 152.115 kb on + strand, within GFF123 at 152.116 kb on - strand, within GFF123 at 152.368 kb on - strand, within GFF123 at 152.481 kb on - strand, within GFF123 at 152.527 kb on - strand, within GFF123 at 152.759 kb on - strand at 152.789 kb on - strand, within GFF124 at 152.907 kb on + strand, within GFF124 at 153.067 kb on + strand, within GFF124 at 153.067 kb on + strand, within GFF124 at 153.067 kb on + strand, within GFF124 at 153.068 kb on - strand, within GFF124 at 153.068 kb on - strand, within GFF124 at 153.068 kb on - strand, within GFF124 at 153.068 kb on - strand, within GFF124 at 153.233 kb on - strand, within GFF124 at 153.233 kb on - strand, within GFF124 at 153.590 kb on - strand, within GFF124 at 154.108 kb on - strand, within GFF125 at 154.596 kb on + strand, within GFF125 at 154.596 kb on + strand, within GFF125 at 154.596 kb on + strand, within GFF125 at 154.770 kb on + strand, within GFF125 at 154.771 kb on - strand, within GFF125
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 151,764 + +0.0 151,915 - GFF123 0.24 -2.2 151,917 + GFF123 0.25 -0.5 151,941 + GFF123 0.27 +0.9 152,115 + GFF123 0.45 -2.0 152,115 + GFF123 0.45 -0.3 152,116 - GFF123 0.46 -0.8 152,368 - GFF123 0.72 +2.2 152,481 - GFF123 0.84 -0.0 152,527 - GFF123 0.89 -1.4 152,759 - -0.3 152,789 - GFF124 0.11 -0.2 152,907 + GFF124 0.20 -0.1 153,067 + GFF124 0.33 +0.5 153,067 + GFF124 0.33 -0.8 153,067 + GFF124 0.33 +0.8 153,068 - GFF124 0.33 -2.0 153,068 - GFF124 0.33 -2.9 153,068 - GFF124 0.33 -0.1 153,068 - GFF124 0.33 -0.6 153,233 - GFF124 0.46 -1.8 153,233 - GFF124 0.46 -2.1 153,590 - GFF124 0.73 -1.6 154,108 - GFF125 0.17 +0.2 154,596 + GFF125 0.64 -0.5 154,596 + GFF125 0.64 +0.6 154,596 + GFF125 0.64 +2.6 154,770 + GFF125 0.80 +0.2 154,771 - GFF125 0.80 +0.8
Or see this region's nucleotide sequence