Strain Fitness in Variovorax sp. SCN45 around GFF1214

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1212 and GFF1213 are separated by 10 nucleotidesGFF1213 and GFF1214 are separated by 58 nucleotidesGFF1214 and GFF1215 are separated by 73 nucleotides GFF1212 - Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD, at 530,715 to 531,641 GFF1212 GFF1213 - Oligopeptide transport permease protein OppB-like @ Glutathione ABC transporter, permease protein GsiC, at 531,652 to 532,572 GFF1213 GFF1214 - Oligopeptide transport substrate-binding protein @ Glutathione ABC transporter, substrate-binding protein GsiB, at 532,631 to 534,184 GFF1214 GFF1215 - Oligopeptide transport ATP-binding protein @ Glutathione ABC transporter, ATP-binding protein GsiA, at 534,258 to 536,135 GFF1215 Position (kb) 532 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 531.660 kb on - strandat 531.680 kb on + strandat 531.681 kb on - strandat 531.686 kb on + strandat 531.686 kb on + strandat 531.687 kb on - strandat 531.687 kb on - strandat 532.055 kb on + strand, within GFF1213at 532.055 kb on + strand, within GFF1213at 532.055 kb on + strand, within GFF1213at 532.055 kb on + strand, within GFF1213at 532.056 kb on - strand, within GFF1213at 532.056 kb on - strand, within GFF1213at 532.058 kb on - strand, within GFF1213at 532.206 kb on - strand, within GFF1213at 532.206 kb on - strand, within GFF1213at 532.206 kb on - strand, within GFF1213at 532.562 kb on + strandat 532.683 kb on + strandat 532.683 kb on + strandat 532.683 kb on + strandat 532.683 kb on + strandat 532.684 kb on - strandat 532.684 kb on - strandat 532.783 kb on - strandat 532.783 kb on - strandat 532.857 kb on + strand, within GFF1214at 532.956 kb on + strand, within GFF1214at 532.956 kb on + strand, within GFF1214at 532.956 kb on + strand, within GFF1214at 532.957 kb on - strand, within GFF1214at 532.957 kb on - strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.959 kb on + strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 532.960 kb on - strand, within GFF1214at 533.112 kb on + strand, within GFF1214at 533.112 kb on + strand, within GFF1214at 533.113 kb on - strand, within GFF1214at 533.113 kb on - strand, within GFF1214at 533.304 kb on + strand, within GFF1214at 533.305 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.338 kb on - strand, within GFF1214at 533.556 kb on + strand, within GFF1214at 533.556 kb on + strand, within GFF1214at 533.557 kb on - strand, within GFF1214at 533.557 kb on - strand, within GFF1214at 533.802 kb on + strand, within GFF1214at 533.802 kb on + strand, within GFF1214at 533.803 kb on - strand, within GFF1214at 533.916 kb on + strand, within GFF1214at 533.917 kb on - strand, within GFF1214at 533.917 kb on - strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.943 kb on + strand, within GFF1214at 533.944 kb on - strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.003 kb on + strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.004 kb on - strand, within GFF1214at 534.048 kb on + strandat 534.048 kb on + strandat 534.048 kb on + strandat 534.049 kb on - strandat 534.072 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.445 kb on + strandat 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.446 kb on - strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.508 kb on + strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 534.509 kb on - strand, within GFF1215at 535.079 kb on - strand, within GFF1215at 535.079 kb on - strand, within GFF1215

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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531,660 - -1.2
531,680 + -1.4
531,681 - +1.1
531,686 + +0.3
531,686 + +3.5
531,687 - +0.4
531,687 - +2.0
532,055 + GFF1213 0.44 -0.4
532,055 + GFF1213 0.44 +0.4
532,055 + GFF1213 0.44 -1.6
532,055 + GFF1213 0.44 -0.0
532,056 - GFF1213 0.44 +2.0
532,056 - GFF1213 0.44 +0.7
532,058 - GFF1213 0.44 +1.0
532,206 - GFF1213 0.60 -1.4
532,206 - GFF1213 0.60 -1.5
532,206 - GFF1213 0.60 -1.4
532,562 + +0.6
532,683 + -1.9
532,683 + -2.0
532,683 + -0.4
532,683 + +1.2
532,684 - -0.2
532,684 - -0.1
532,783 - -1.4
532,783 - +1.7
532,857 + GFF1214 0.15 +2.5
532,956 + GFF1214 0.21 -0.4
532,956 + GFF1214 0.21 -0.3
532,956 + GFF1214 0.21 -1.3
532,957 - GFF1214 0.21 +0.4
532,957 - GFF1214 0.21 -1.4
532,959 + GFF1214 0.21 +0.5
532,959 + GFF1214 0.21 -2.0
532,959 + GFF1214 0.21 +0.4
532,959 + GFF1214 0.21 -0.1
532,959 + GFF1214 0.21 -3.7
532,959 + GFF1214 0.21 +2.2
532,959 + GFF1214 0.21 -1.3
532,959 + GFF1214 0.21 +0.9
532,960 - GFF1214 0.21 -1.0
532,960 - GFF1214 0.21 +0.9
532,960 - GFF1214 0.21 -3.4
532,960 - GFF1214 0.21 -0.9
532,960 - GFF1214 0.21 +1.1
532,960 - GFF1214 0.21 +0.4
533,112 + GFF1214 0.31 -0.4
533,112 + GFF1214 0.31 +0.7
533,113 - GFF1214 0.31 +0.8
533,113 - GFF1214 0.31 +0.2
533,304 + GFF1214 0.43 -0.9
533,305 - GFF1214 0.43 +0.7
533,338 - GFF1214 0.45 +1.6
533,338 - GFF1214 0.45 -1.2
533,338 - GFF1214 0.45 -0.6
533,556 + GFF1214 0.60 -0.5
533,556 + GFF1214 0.60 +0.4
533,557 - GFF1214 0.60 -1.9
533,557 - GFF1214 0.60 -0.0
533,802 + GFF1214 0.75 +1.0
533,802 + GFF1214 0.75 +0.4
533,803 - GFF1214 0.75 -2.9
533,916 + GFF1214 0.83 -1.4
533,917 - GFF1214 0.83 -0.0
533,917 - GFF1214 0.83 -2.1
533,943 + GFF1214 0.84 -2.7
533,943 + GFF1214 0.84 +0.4
533,943 + GFF1214 0.84 +2.1
533,943 + GFF1214 0.84 +0.6
533,943 + GFF1214 0.84 -0.9
533,944 - GFF1214 0.84 -2.4
534,003 + GFF1214 0.88 -0.2
534,003 + GFF1214 0.88 +0.6
534,003 + GFF1214 0.88 +1.0
534,003 + GFF1214 0.88 -0.4
534,003 + GFF1214 0.88 -0.2
534,004 - GFF1214 0.88 +1.0
534,004 - GFF1214 0.88 -0.4
534,004 - GFF1214 0.88 +0.1
534,004 - GFF1214 0.88 -1.2
534,004 - GFF1214 0.88 +0.4
534,004 - GFF1214 0.88 +1.6
534,004 - GFF1214 0.88 +0.4
534,048 + +0.3
534,048 + -1.0
534,048 + -0.2
534,049 - +0.3
534,072 + -3.0
534,445 + -1.5
534,445 + -1.9
534,445 + -1.4
534,445 + -0.4
534,445 + +0.0
534,445 + -2.5
534,445 + -0.8
534,446 - GFF1215 0.10 +0.5
534,446 - GFF1215 0.10 +0.5
534,446 - GFF1215 0.10 +0.4
534,446 - GFF1215 0.10 -1.9
534,446 - GFF1215 0.10 +1.3
534,508 + GFF1215 0.13 -1.2
534,508 + GFF1215 0.13 -0.0
534,508 + GFF1215 0.13 -2.0
534,508 + GFF1215 0.13 -2.0
534,508 + GFF1215 0.13 -1.5
534,509 - GFF1215 0.13 +0.6
534,509 - GFF1215 0.13 +0.2
534,509 - GFF1215 0.13 -1.1
534,509 - GFF1215 0.13 -2.6
534,509 - GFF1215 0.13 -2.1
535,079 - GFF1215 0.44 -1.7
535,079 - GFF1215 0.44 -0.6

Or see this region's nucleotide sequence