Strain Fitness in Variovorax sp. SCN45 around GFF1175

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1173 and GFF1174 are separated by 141 nucleotidesGFF1174 and GFF1175 are separated by 63 nucleotidesGFF1175 and GFF1176 overlap by 4 nucleotides GFF1173 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 489,238 to 490,419 GFF1173 GFF1174 - Transcriptional regulator, IclR family, at 490,561 to 491,331 GFF1174 GFF1175 - Two-component system response regulator QseB, at 491,395 to 492,054 GFF1175 GFF1176 - Sensory histidine kinase QseC, at 492,051 to 493,379 GFF1176 Position (kb) 491 492 493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 490.452 kb on - strandat 490.729 kb on + strand, within GFF1174at 490.750 kb on + strand, within GFF1174at 490.750 kb on + strand, within GFF1174at 490.792 kb on + strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.951 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.141 kb on - strand, within GFF1174at 491.254 kb on + strand, within GFF1174at 491.291 kb on + strandat 491.292 kb on - strandat 491.354 kb on - strandat 491.411 kb on + strandat 491.411 kb on + strandat 491.412 kb on - strandat 491.467 kb on + strand, within GFF1175at 491.467 kb on + strand, within GFF1175at 491.468 kb on - strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.528 kb on - strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.701 kb on + strand, within GFF1175at 491.701 kb on + strand, within GFF1175at 491.773 kb on + strand, within GFF1175at 491.773 kb on + strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.929 kb on + strand, within GFF1175at 491.929 kb on + strand, within GFF1175at 491.930 kb on - strand, within GFF1175at 491.930 kb on - strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.051 kb on - strandat 492.051 kb on - strandat 492.051 kb on - strandat 492.147 kb on + strandat 492.148 kb on - strandat 492.186 kb on + strand, within GFF1176at 492.187 kb on - strand, within GFF1176at 492.187 kb on - strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.397 kb on - strand, within GFF1176

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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490,452 - -1.2
490,729 + GFF1174 0.22 +1.5
490,750 + GFF1174 0.25 +0.5
490,750 + GFF1174 0.25 -0.8
490,792 + GFF1174 0.30 -2.5
490,793 - GFF1174 0.30 +0.4
490,793 - GFF1174 0.30 -2.6
490,793 - GFF1174 0.30 +0.5
490,793 - GFF1174 0.30 -3.0
490,793 - GFF1174 0.30 +0.6
490,793 - GFF1174 0.30 -1.3
490,793 - GFF1174 0.30 +0.6
490,925 - GFF1174 0.47 -0.7
490,925 - GFF1174 0.47 -2.0
490,925 - GFF1174 0.47 -2.0
490,951 + GFF1174 0.51 -2.7
491,140 + GFF1174 0.75 +1.3
491,140 + GFF1174 0.75 -0.0
491,140 + GFF1174 0.75 -0.6
491,141 - GFF1174 0.75 -1.5
491,254 + GFF1174 0.90 +0.6
491,291 + -1.3
491,292 - +0.1
491,354 - -1.9
491,411 + -1.2
491,411 + +0.1
491,412 - +1.8
491,467 + GFF1175 0.11 -0.7
491,467 + GFF1175 0.11 -0.0
491,468 - GFF1175 0.11 +0.5
491,527 + GFF1175 0.20 -1.0
491,527 + GFF1175 0.20 +0.6
491,527 + GFF1175 0.20 +1.7
491,528 - GFF1175 0.20 -0.3
491,657 + GFF1175 0.40 +1.1
491,657 + GFF1175 0.40 -2.7
491,657 + GFF1175 0.40 -0.0
491,657 + GFF1175 0.40 -0.3
491,657 + GFF1175 0.40 -2.3
491,657 + GFF1175 0.40 +0.2
491,658 - GFF1175 0.40 +1.5
491,658 - GFF1175 0.40 -2.5
491,658 - GFF1175 0.40 +2.0
491,658 - GFF1175 0.40 -0.0
491,658 - GFF1175 0.40 +0.6
491,686 + GFF1175 0.44 -1.0
491,686 + GFF1175 0.44 -0.8
491,686 + GFF1175 0.44 -1.4
491,687 - GFF1175 0.44 +0.4
491,687 - GFF1175 0.44 +0.4
491,687 - GFF1175 0.44 -2.2
491,701 + GFF1175 0.46 -0.6
491,701 + GFF1175 0.46 -1.8
491,773 + GFF1175 0.57 -1.4
491,773 + GFF1175 0.57 -2.6
491,774 - GFF1175 0.57 +0.5
491,774 - GFF1175 0.57 +3.8
491,774 - GFF1175 0.57 +0.4
491,774 - GFF1175 0.57 +1.1
491,929 + GFF1175 0.81 -0.0
491,929 + GFF1175 0.81 +0.2
491,930 - GFF1175 0.81 -1.2
491,930 - GFF1175 0.81 +0.6
491,971 + GFF1175 0.87 +0.1
491,971 + GFF1175 0.87 -1.6
491,971 + GFF1175 0.87 -2.8
491,971 + GFF1175 0.87 +2.8
491,971 + GFF1175 0.87 +0.5
491,971 + GFF1175 0.87 +1.1
491,971 + GFF1175 0.87 -2.1
491,972 - GFF1175 0.87 -1.9
491,972 - GFF1175 0.87 -1.9
491,972 - GFF1175 0.87 -3.8
491,972 - GFF1175 0.87 -0.9
492,034 + +1.7
492,034 + +0.2
492,034 + -3.0
492,034 + +0.5
492,034 + -0.6
492,035 - +0.5
492,035 - -0.0
492,035 - +1.8
492,035 - +2.4
492,035 - -0.4
492,050 + +0.6
492,050 + +0.4
492,050 + -1.0
492,050 + -1.3
492,051 - -1.9
492,051 - -1.0
492,051 - -0.3
492,147 + -1.2
492,148 - +1.0
492,186 + GFF1176 0.10 -0.4
492,187 - GFF1176 0.10 +1.5
492,187 - GFF1176 0.10 -2.1
492,396 + GFF1176 0.26 -1.6
492,396 + GFF1176 0.26 +2.8
492,396 + GFF1176 0.26 -0.5
492,397 - GFF1176 0.26 -2.5

Or see this region's nucleotide sequence