Strain Fitness in Variovorax sp. SCN45 around GFF1173

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1171 and GFF1172 are separated by 13 nucleotidesGFF1172 and GFF1173 overlap by 4 nucleotidesGFF1173 and GFF1174 are separated by 141 nucleotidesGFF1174 and GFF1175 are separated by 63 nucleotides GFF1171 - Transcriptional regulator, AraC family, at 487,924 to 488,823 GFF1171 GFF1172 - hypothetical protein, at 488,837 to 489,241 GFF1172 GFF1173 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 489,238 to 490,419 GFF1173 GFF1174 - Transcriptional regulator, IclR family, at 490,561 to 491,331 GFF1174 GFF1175 - Two-component system response regulator QseB, at 491,395 to 492,054 GFF1175 Position (kb) 489 490 491Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 488.563 kb on + strand, within GFF1171at 488.563 kb on + strand, within GFF1171at 488.563 kb on + strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 489.053 kb on + strand, within GFF1172at 489.053 kb on + strand, within GFF1172at 489.053 kb on + strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.239 kb on + strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.311 kb on + strandat 489.470 kb on + strand, within GFF1173at 489.471 kb on - strand, within GFF1173at 489.471 kb on - strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.498 kb on - strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.758 kb on + strand, within GFF1173at 489.758 kb on + strand, within GFF1173at 489.759 kb on - strand, within GFF1173at 489.818 kb on + strand, within GFF1173at 489.818 kb on + strand, within GFF1173at 489.878 kb on + strand, within GFF1173at 489.890 kb on + strand, within GFF1173at 489.890 kb on + strand, within GFF1173at 489.891 kb on - strand, within GFF1173at 489.938 kb on + strand, within GFF1173at 489.998 kb on + strand, within GFF1173at 490.055 kb on + strand, within GFF1173at 490.055 kb on + strand, within GFF1173at 490.056 kb on - strand, within GFF1173at 490.056 kb on - strand, within GFF1173at 490.121 kb on + strand, within GFF1173at 490.121 kb on + strand, within GFF1173at 490.122 kb on - strand, within GFF1173at 490.307 kb on + strandat 490.307 kb on + strandat 490.307 kb on + strandat 490.308 kb on - strandat 490.308 kb on - strandat 490.308 kb on - strandat 490.308 kb on - strandat 490.452 kb on - strandat 490.729 kb on + strand, within GFF1174at 490.750 kb on + strand, within GFF1174at 490.750 kb on + strand, within GFF1174at 490.792 kb on + strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.793 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.925 kb on - strand, within GFF1174at 490.951 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.141 kb on - strand, within GFF1174at 491.254 kb on + strand, within GFF1174at 491.291 kb on + strandat 491.292 kb on - strandat 491.354 kb on - strandat 491.411 kb on + strandat 491.411 kb on + strandat 491.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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488,563 + GFF1171 0.71 +0.8
488,563 + GFF1171 0.71 -0.4
488,563 + GFF1171 0.71 -3.0
488,564 - GFF1171 0.71 -2.8
488,564 - GFF1171 0.71 -1.6
488,564 - GFF1171 0.71 -2.0
488,564 - GFF1171 0.71 -0.0
489,053 + GFF1172 0.53 -0.4
489,053 + GFF1172 0.53 -0.6
489,053 + GFF1172 0.53 -1.5
489,054 - GFF1172 0.54 +0.4
489,054 - GFF1172 0.54 -0.8
489,054 - GFF1172 0.54 -1.0
489,054 - GFF1172 0.54 -2.2
489,054 - GFF1172 0.54 -1.9
489,173 + GFF1172 0.83 -0.0
489,173 + GFF1172 0.83 -0.8
489,173 + GFF1172 0.83 +0.8
489,173 + GFF1172 0.83 -1.1
489,174 - GFF1172 0.83 -0.0
489,174 - GFF1172 0.83 -2.0
489,174 - GFF1172 0.83 -3.1
489,239 + -1.3
489,240 - -1.7
489,240 - +3.0
489,240 - +0.4
489,240 - -1.5
489,240 - -1.2
489,266 + -0.5
489,266 + +0.0
489,266 + +0.0
489,266 + -0.7
489,266 + -0.7
489,266 + -0.0
489,266 + -1.6
489,267 - -1.0
489,267 - -0.6
489,267 - -2.0
489,267 - -0.6
489,311 + +0.0
489,470 + GFF1173 0.20 -1.5
489,471 - GFF1173 0.20 -2.5
489,471 - GFF1173 0.20 -0.7
489,497 + GFF1173 0.22 -2.6
489,497 + GFF1173 0.22 -0.5
489,497 + GFF1173 0.22 -1.2
489,497 + GFF1173 0.22 -3.0
489,498 - GFF1173 0.22 +1.4
489,755 + GFF1173 0.44 -1.7
489,755 + GFF1173 0.44 -0.6
489,755 + GFF1173 0.44 -0.2
489,755 + GFF1173 0.44 +0.5
489,756 - GFF1173 0.44 -2.4
489,756 - GFF1173 0.44 -0.1
489,756 - GFF1173 0.44 -0.2
489,756 - GFF1173 0.44 -2.4
489,756 - GFF1173 0.44 -0.9
489,756 - GFF1173 0.44 -3.2
489,756 - GFF1173 0.44 -4.2
489,756 - GFF1173 0.44 -0.0
489,756 - GFF1173 0.44 -2.5
489,756 - GFF1173 0.44 -0.8
489,756 - GFF1173 0.44 +1.2
489,756 - GFF1173 0.44 -2.3
489,758 + GFF1173 0.44 +0.4
489,758 + GFF1173 0.44 -0.9
489,759 - GFF1173 0.44 -1.2
489,818 + GFF1173 0.49 +0.9
489,818 + GFF1173 0.49 -0.6
489,878 + GFF1173 0.54 +0.6
489,890 + GFF1173 0.55 +2.0
489,890 + GFF1173 0.55 +0.4
489,891 - GFF1173 0.55 -2.9
489,938 + GFF1173 0.59 -0.7
489,998 + GFF1173 0.64 -1.2
490,055 + GFF1173 0.69 -3.7
490,055 + GFF1173 0.69 +0.4
490,056 - GFF1173 0.69 -0.3
490,056 - GFF1173 0.69 -2.4
490,121 + GFF1173 0.75 +0.1
490,121 + GFF1173 0.75 -1.7
490,122 - GFF1173 0.75 -0.0
490,307 + -1.0
490,307 + +2.2
490,307 + -0.9
490,308 - -0.6
490,308 - +1.0
490,308 - -2.0
490,308 - +1.3
490,452 - -1.2
490,729 + GFF1174 0.22 +1.5
490,750 + GFF1174 0.25 +0.5
490,750 + GFF1174 0.25 -0.8
490,792 + GFF1174 0.30 -2.5
490,793 - GFF1174 0.30 +0.4
490,793 - GFF1174 0.30 -2.6
490,793 - GFF1174 0.30 +0.5
490,793 - GFF1174 0.30 -3.0
490,793 - GFF1174 0.30 +0.6
490,793 - GFF1174 0.30 -1.3
490,793 - GFF1174 0.30 +0.6
490,925 - GFF1174 0.47 -0.7
490,925 - GFF1174 0.47 -2.0
490,925 - GFF1174 0.47 -2.0
490,951 + GFF1174 0.51 -2.7
491,140 + GFF1174 0.75 +1.3
491,140 + GFF1174 0.75 -0.0
491,140 + GFF1174 0.75 -0.6
491,141 - GFF1174 0.75 -1.5
491,254 + GFF1174 0.90 +0.6
491,291 + -1.3
491,292 - +0.1
491,354 - -1.9
491,411 + -1.2
491,411 + +0.1
491,412 - +1.8

Or see this region's nucleotide sequence