Strain Fitness in Variovorax sp. SCN45 around GFF1145

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1144 and GFF1145 are separated by 48 nucleotidesGFF1145 and GFF1146 are separated by 1 nucleotides GFF1144 - hypothetical protein, at 459,799 to 461,700 GFF1144 GFF1145 - hypothetical protein, at 461,749 to 462,117 GFF1145 GFF1146 - Pyrophosphate-energized proton pump (EC 3.6.1.1), at 462,119 to 464,635 GFF1146 Position (kb) 461 462 463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 461.063 kb on + strand, within GFF1144at 461.063 kb on + strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.564 kb on + strandat 461.564 kb on + strandat 461.564 kb on + strandat 461.565 kb on - strandat 461.565 kb on - strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.693 kb on + strandat 461.694 kb on - strandat 461.694 kb on - strandat 461.777 kb on + strandat 461.777 kb on + strandat 461.778 kb on - strandat 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.128 kb on + strandat 462.128 kb on + strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.408 kb on + strand, within GFF1146at 462.408 kb on + strand, within GFF1146at 462.408 kb on + strand, within GFF1146at 462.409 kb on - strand, within GFF1146at 462.669 kb on + strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.957 kb on + strand, within GFF1146at 462.957 kb on + strand, within GFF1146at 462.958 kb on - strand, within GFF1146at 463.078 kb on - strand, within GFF1146

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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461,063 + GFF1144 0.66 -0.2
461,063 + GFF1144 0.66 +2.0
461,064 - GFF1144 0.67 -1.0
461,064 - GFF1144 0.67 -0.9
461,064 - GFF1144 0.67 -2.2
461,064 - GFF1144 0.67 +0.6
461,064 - GFF1144 0.67 -2.1
461,064 - GFF1144 0.67 +0.5
461,255 + GFF1144 0.77 +0.2
461,255 + GFF1144 0.77 +0.7
461,255 + GFF1144 0.77 -0.8
461,255 + GFF1144 0.77 -2.3
461,255 + GFF1144 0.77 +0.8
461,255 + GFF1144 0.77 -1.8
461,255 + GFF1144 0.77 +0.5
461,255 + GFF1144 0.77 +1.4
461,255 + GFF1144 0.77 +2.5
461,256 - GFF1144 0.77 -1.6
461,256 - GFF1144 0.77 -1.2
461,256 - GFF1144 0.77 -0.8
461,256 - GFF1144 0.77 +0.2
461,256 - GFF1144 0.77 +0.8
461,256 - GFF1144 0.77 +0.8
461,256 - GFF1144 0.77 -2.0
461,256 - GFF1144 0.77 -0.0
461,256 - GFF1144 0.77 -4.1
461,256 - GFF1144 0.77 -1.8
461,256 - GFF1144 0.77 -0.0
461,276 + GFF1144 0.78 -0.0
461,276 + GFF1144 0.78 -1.7
461,276 + GFF1144 0.78 -0.4
461,276 + GFF1144 0.78 -1.5
461,277 - GFF1144 0.78 -2.5
461,277 - GFF1144 0.78 +0.4
461,277 - GFF1144 0.78 +1.1
461,277 - GFF1144 0.78 -0.3
461,277 - GFF1144 0.78 +1.6
461,483 + GFF1144 0.89 +0.5
461,483 + GFF1144 0.89 -1.0
461,483 + GFF1144 0.89 -2.8
461,483 + GFF1144 0.89 -0.4
461,483 + GFF1144 0.89 -2.5
461,483 + GFF1144 0.89 -1.6
461,483 + GFF1144 0.89 +0.3
461,483 + GFF1144 0.89 -1.6
461,483 + GFF1144 0.89 -0.3
461,483 + GFF1144 0.89 -1.8
461,483 + GFF1144 0.89 +1.1
461,484 - GFF1144 0.89 -2.2
461,484 - GFF1144 0.89 +0.6
461,484 - GFF1144 0.89 -0.4
461,484 - GFF1144 0.89 +3.4
461,484 - GFF1144 0.89 +0.8
461,484 - GFF1144 0.89 -0.6
461,484 - GFF1144 0.89 -1.3
461,484 - GFF1144 0.89 -1.2
461,484 - GFF1144 0.89 -2.5
461,484 - GFF1144 0.89 +0.4
461,484 - GFF1144 0.89 +0.4
461,484 - GFF1144 0.89 +0.4
461,484 - GFF1144 0.89 +1.0
461,484 - GFF1144 0.89 -0.3
461,484 - GFF1144 0.89 -1.2
461,484 - GFF1144 0.89 -0.0
461,564 + -0.1
461,564 + -0.1
461,564 + -1.9
461,565 - -0.0
461,565 - -2.3
461,576 + +0.6
461,576 + +0.4
461,576 + -0.9
461,576 + -1.4
461,576 + +1.1
461,577 - -1.2
461,577 - -2.8
461,577 - +0.5
461,577 - +2.2
461,577 - -1.3
461,577 - -1.4
461,693 + +0.4
461,694 - -4.4
461,694 - -1.8
461,777 + -0.0
461,777 + -0.4
461,778 - +0.0
462,038 + GFF1145 0.78 +0.0
462,038 + GFF1145 0.78 -1.2
462,038 + GFF1145 0.78 +1.4
462,038 + GFF1145 0.78 -0.6
462,038 + GFF1145 0.78 +0.6
462,038 + GFF1145 0.78 -0.5
462,038 + GFF1145 0.78 +1.9
462,038 + GFF1145 0.78 -1.4
462,038 + GFF1145 0.78 +1.0
462,039 - GFF1145 0.79 -1.6
462,039 - GFF1145 0.79 +0.5
462,039 - GFF1145 0.79 -3.4
462,039 - GFF1145 0.79 -1.2
462,039 - GFF1145 0.79 +0.5
462,039 - GFF1145 0.79 -0.0
462,041 + GFF1145 0.79 +1.1
462,041 + GFF1145 0.79 +2.0
462,041 + GFF1145 0.79 +0.5
462,041 + GFF1145 0.79 +1.1
462,041 + GFF1145 0.79 +1.6
462,041 + GFF1145 0.79 -2.2
462,041 + GFF1145 0.79 +1.0
462,041 + GFF1145 0.79 +1.7
462,042 - GFF1145 0.79 -3.1
462,042 - GFF1145 0.79 -0.5
462,042 - GFF1145 0.79 +1.0
462,042 - GFF1145 0.79 -1.6
462,042 - GFF1145 0.79 -0.7
462,042 - GFF1145 0.79 -1.7
462,128 + -1.4
462,128 + +0.7
462,129 - -0.0
462,129 - +0.4
462,129 - +0.4
462,129 - -2.1
462,408 + GFF1146 0.11 +0.4
462,408 + GFF1146 0.11 +1.7
462,408 + GFF1146 0.11 +0.2
462,409 - GFF1146 0.12 +0.2
462,669 + GFF1146 0.22 +0.4
462,670 - GFF1146 0.22 +0.4
462,670 - GFF1146 0.22 -2.2
462,670 - GFF1146 0.22 -3.8
462,670 - GFF1146 0.22 +2.0
462,670 - GFF1146 0.22 +0.6
462,750 + GFF1146 0.25 -3.2
462,750 + GFF1146 0.25 -1.8
462,750 + GFF1146 0.25 -1.6
462,750 + GFF1146 0.25 +2.0
462,751 - GFF1146 0.25 -3.2
462,751 - GFF1146 0.25 -0.1
462,751 - GFF1146 0.25 -1.0
462,751 - GFF1146 0.25 -2.3
462,751 - GFF1146 0.25 -0.5
462,957 + GFF1146 0.33 -1.5
462,957 + GFF1146 0.33 +0.4
462,958 - GFF1146 0.33 +1.0
463,078 - GFF1146 0.38 +0.6

Or see this region's nucleotide sequence