Strain Fitness in Variovorax sp. SCN45 around GFF954

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF952 and GFF953 overlap by 1 nucleotidesGFF953 and GFF954 are separated by 193 nucleotidesGFF954 and GFF955 are separated by 32 nucleotidesGFF955 and GFF956 are separated by 231 nucleotides GFF952 - Ferredoxin, 2Fe-2S, at 266,241 to 266,579 GFF952 GFF953 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 266,579 to 267,301 GFF953 GFF954 - hypothetical protein, at 267,495 to 267,839 GFF954 GFF955 - N-acetylmuramoyl-L-alanine amidase, family 2, at 267,872 to 268,474 GFF955 GFF956 - hypothetical protein, at 268,706 to 268,828 GFF956 Position (kb) 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.328 kb on + strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.527 kb on + strandat 267.528 kb on - strandat 267.528 kb on - strandat 267.541 kb on + strand, within GFF954at 267.541 kb on + strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.873 kb on + strandat 267.873 kb on + strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.882 kb on - strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.933 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.087 kb on - strand, within GFF955at 268.194 kb on - strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.427 kb on + strandat 268.428 kb on - strandat 268.428 kb on - strandat 268.531 kb on - strandat 268.531 kb on - strandat 268.572 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.611 kb on - strandat 268.611 kb on - strandat 268.611 kb on - strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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267,244 + -0.3
267,244 + -1.6
267,244 + -2.4
267,328 + -0.2
267,497 - -0.6
267,497 - -2.4
267,497 - -0.3
267,527 + +0.2
267,528 - -1.3
267,528 - -1.0
267,541 + GFF954 0.13 -0.7
267,541 + GFF954 0.13 -1.6
267,542 - GFF954 0.14 -0.6
267,542 - GFF954 0.14 -0.2
267,542 - GFF954 0.14 -0.3
267,542 - GFF954 0.14 -1.0
267,542 - GFF954 0.14 -0.6
267,637 + GFF954 0.41 +1.0
267,637 + GFF954 0.41 -2.7
267,637 + GFF954 0.41 +2.7
267,637 + GFF954 0.41 -1.5
267,637 + GFF954 0.41 +0.2
267,637 + GFF954 0.41 +1.9
267,637 + GFF954 0.41 +0.5
267,637 + GFF954 0.41 -1.8
267,637 + GFF954 0.41 -0.8
267,637 + GFF954 0.41 -0.3
267,638 - GFF954 0.41 -1.3
267,638 - GFF954 0.41 -0.6
267,638 - GFF954 0.41 -3.2
267,655 + GFF954 0.46 -0.8
267,655 + GFF954 0.46 +1.6
267,655 + GFF954 0.46 +0.2
267,655 + GFF954 0.46 +1.6
267,655 + GFF954 0.46 -0.9
267,655 + GFF954 0.46 -2.8
267,655 + GFF954 0.46 +0.8
267,655 + GFF954 0.46 -1.0
267,655 + GFF954 0.46 -1.6
267,655 + GFF954 0.46 +1.0
267,656 - GFF954 0.47 -2.7
267,656 - GFF954 0.47 +0.3
267,656 - GFF954 0.47 +1.4
267,656 - GFF954 0.47 -0.0
267,656 - GFF954 0.47 -0.1
267,656 - GFF954 0.47 +0.6
267,656 - GFF954 0.47 +0.3
267,656 - GFF954 0.47 +0.9
267,656 - GFF954 0.47 -0.4
267,656 - GFF954 0.47 -0.3
267,656 - GFF954 0.47 -1.8
267,656 - GFF954 0.47 -3.0
267,656 - GFF954 0.47 +1.4
267,656 - GFF954 0.47 -0.5
267,676 + GFF954 0.52 +1.0
267,676 + GFF954 0.52 +0.2
267,676 + GFF954 0.52 -3.5
267,676 + GFF954 0.52 -1.2
267,676 + GFF954 0.52 -1.2
267,676 + GFF954 0.52 -1.4
267,676 + GFF954 0.52 +0.4
267,676 + GFF954 0.52 -0.7
267,676 + GFF954 0.52 -0.2
267,676 + GFF954 0.52 +0.8
267,676 + GFF954 0.52 -1.1
267,677 - GFF954 0.53 -2.1
267,677 - GFF954 0.53 -1.3
267,677 - GFF954 0.53 -1.6
267,677 - GFF954 0.53 +0.1
267,677 - GFF954 0.53 -1.9
267,677 - GFF954 0.53 -2.1
267,677 - GFF954 0.53 -1.1
267,677 - GFF954 0.53 +0.4
267,677 - GFF954 0.53 +0.1
267,677 - GFF954 0.53 +0.1
267,787 + GFF954 0.85 -0.6
267,787 + GFF954 0.85 -1.5
267,787 + GFF954 0.85 +0.2
267,787 + GFF954 0.85 -0.3
267,787 + GFF954 0.85 -2.0
267,787 + GFF954 0.85 -0.6
267,788 - GFF954 0.85 -0.6
267,788 - GFF954 0.85 -2.5
267,873 + -0.1
267,873 + -0.3
267,874 - -0.7
267,874 - -0.8
267,874 - -0.9
267,874 - -1.1
267,874 - +0.3
267,874 - +1.7
267,882 - -1.9
267,912 + -2.9
267,912 + -0.7
267,912 + -1.9
267,912 + +2.2
267,912 + -0.1
267,912 + -1.1
267,912 + -1.1
267,912 + -1.3
267,912 + +1.1
267,912 + -1.6
267,912 + +1.7
267,913 - -1.7
267,913 - +0.3
267,913 - -1.0
267,913 - +0.6
267,913 - -1.1
267,913 - -1.1
267,933 + GFF955 0.10 -0.6
267,966 + GFF955 0.16 -1.5
267,966 + GFF955 0.16 +0.8
267,966 + GFF955 0.16 -0.6
267,966 + GFF955 0.16 +0.3
267,966 + GFF955 0.16 -1.6
267,966 + GFF955 0.16 +0.7
267,966 + GFF955 0.16 +0.5
267,966 + GFF955 0.16 +0.6
267,966 + GFF955 0.16 -0.3
267,966 + GFF955 0.16 -2.6
267,966 + GFF955 0.16 +1.5
267,966 + GFF955 0.16 +0.6
267,966 + GFF955 0.16 -0.1
267,966 + GFF955 0.16 -1.0
267,966 + GFF955 0.16 -1.0
267,967 - GFF955 0.16 +0.6
267,967 - GFF955 0.16 -0.8
267,967 - GFF955 0.16 -0.9
267,967 - GFF955 0.16 -0.4
267,967 - GFF955 0.16 +0.8
267,967 - GFF955 0.16 -1.3
267,967 - GFF955 0.16 +1.0
267,967 - GFF955 0.16 +2.3
268,023 + GFF955 0.25 -0.9
268,023 + GFF955 0.25 +1.9
268,023 + GFF955 0.25 -0.7
268,023 + GFF955 0.25 +1.2
268,023 + GFF955 0.25 -0.3
268,023 + GFF955 0.25 -2.6
268,023 + GFF955 0.25 -3.1
268,023 + GFF955 0.25 -0.0
268,024 - GFF955 0.25 +0.6
268,024 - GFF955 0.25 -0.6
268,024 - GFF955 0.25 +1.1
268,024 - GFF955 0.25 -1.2
268,024 - GFF955 0.25 -1.8
268,024 - GFF955 0.25 -1.6
268,087 - GFF955 0.36 +1.5
268,194 - GFF955 0.53 +3.2
268,239 + GFF955 0.61 -1.1
268,239 + GFF955 0.61 -1.5
268,239 + GFF955 0.61 +0.8
268,239 + GFF955 0.61 -0.4
268,240 - GFF955 0.61 -0.6
268,240 - GFF955 0.61 -1.2
268,240 - GFF955 0.61 -0.5
268,251 + GFF955 0.63 +1.9
268,251 + GFF955 0.63 -0.8
268,251 + GFF955 0.63 +0.6
268,251 + GFF955 0.63 -0.2
268,251 + GFF955 0.63 -0.2
268,252 - GFF955 0.63 +1.5
268,252 - GFF955 0.63 -0.4
268,252 - GFF955 0.63 +0.0
268,252 - GFF955 0.63 +0.4
268,252 - GFF955 0.63 +0.8
268,252 - GFF955 0.63 -0.5
268,252 - GFF955 0.63 -1.1
268,252 - GFF955 0.63 +0.7
268,269 + GFF955 0.66 -1.8
268,269 + GFF955 0.66 +0.4
268,269 + GFF955 0.66 -0.6
268,269 + GFF955 0.66 -0.8
268,269 + GFF955 0.66 +0.6
268,269 + GFF955 0.66 +0.1
268,270 - GFF955 0.66 -1.5
268,270 - GFF955 0.66 -0.2
268,270 - GFF955 0.66 -1.8
268,270 - GFF955 0.66 -0.6
268,270 - GFF955 0.66 -1.2
268,270 - GFF955 0.66 +0.3
268,427 + +3.1
268,428 - -1.0
268,428 - +1.5
268,531 - +1.9
268,531 - -0.2
268,572 + -1.5
268,610 + -2.1
268,610 + +1.4
268,610 + +1.7
268,610 + +0.3
268,610 + +0.6
268,610 + -0.6
268,611 - -1.1
268,611 - -1.8
268,611 - -0.9
268,679 + -0.1
268,679 + -2.4
268,679 + -0.2
268,679 + -1.5
268,679 + -1.8
268,679 + +1.8
268,679 + -0.7
268,680 - +0.0
268,680 - +0.2
268,680 - -0.5
268,680 - +0.0
268,680 - -4.0
268,680 - -1.6

Or see this region's nucleotide sequence