Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF844 and GFF845 are separated by 90 nucleotides GFF845 and GFF846 overlap by 4 nucleotides GFF846 and GFF847 are separated by 16 nucleotides
GFF844 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 153,222 to 154,661
GFF844
GFF845 - dTDP-glucose 4,6-dehydratase, at 154,752 to 155,495
GFF845
GFF846 - hypothetical protein, at 155,492 to 156,025
GFF846
GFF847 - Acetyltransferase, at 156,042 to 156,548
GFF847
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.788 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.462 kb on + strand, within GFF844 at 154.463 kb on - strand, within GFF844 at 154.579 kb on + strand at 154.580 kb on - strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.765 kb on + strand at 154.765 kb on + strand at 154.830 kb on + strand, within GFF845 at 155.130 kb on + strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 156.070 kb on + strand at 156.071 kb on - strand at 156.121 kb on + strand, within GFF847 at 156.121 kb on + strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.181 kb on + strand, within GFF847 at 156.182 kb on - strand, within GFF847 at 156.184 kb on + strand, within GFF847 at 156.185 kb on - strand, within GFF847
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 153,788 - GFF844 0.39 +2.1 154,202 - GFF844 0.68 -0.3 154,202 - GFF844 0.68 -0.7 154,202 - GFF844 0.68 -2.2 154,202 - GFF844 0.68 +0.4 154,438 + GFF844 0.84 -0.2 154,438 + GFF844 0.84 -0.3 154,462 + GFF844 0.86 +0.1 154,463 - GFF844 0.86 -2.1 154,579 + -0.4 154,580 - -1.5 154,715 - -0.4 154,715 - +3.1 154,765 + -2.2 154,765 + -0.4 154,830 + GFF845 0.10 -0.9 155,130 + GFF845 0.51 -2.9 155,131 - GFF845 0.51 +0.4 155,131 - GFF845 0.51 -0.2 156,070 + +0.3 156,071 - +1.9 156,121 + GFF847 0.16 +0.7 156,121 + GFF847 0.16 +0.1 156,122 - GFF847 0.16 -0.7 156,122 - GFF847 0.16 +0.3 156,122 - GFF847 0.16 -0.9 156,181 + GFF847 0.27 +0.2 156,182 - GFF847 0.28 -1.3 156,184 + GFF847 0.28 +0.6 156,185 - GFF847 0.28 +0.0
Or see this region's nucleotide sequence