Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF81 and GFF82 are separated by 8 nucleotides GFF82 and GFF83 overlap by 4 nucleotides GFF83 and GFF84 are separated by 112 nucleotides GFF84 and GFF85 are separated by 131 nucleotides
GFF81 - Bll6900 protein, at 98,293 to 98,895
GFF81
GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557
GFF82
GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615
GFF83
GFF84 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 100,728 to 101,444
GFF84
GFF85 - Transcriptional regulator, LysR family, at 101,576 to 102,475
GFF85
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.729 kb on + strand, within GFF81 at 98.730 kb on - strand, within GFF81 at 98.867 kb on + strand at 98.867 kb on + strand at 98.868 kb on - strand at 99.151 kb on + strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.197 kb on - strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.960 kb on + strand, within GFF83 at 100.134 kb on + strand, within GFF83 at 100.135 kb on - strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.695 kb on + strand at 100.695 kb on + strand at 100.695 kb on + strand at 100.695 kb on + strand at 100.696 kb on - strand at 100.757 kb on - strand at 101.110 kb on + strand, within GFF84 at 101.110 kb on + strand, within GFF84 at 101.111 kb on - strand, within GFF84 at 101.420 kb on - strand at 101.470 kb on + strand at 101.470 kb on + strand at 101.471 kb on - strand at 101.486 kb on + strand at 101.486 kb on + strand at 101.487 kb on - strand at 101.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 98,582 + GFF81 0.48 +2.2 98,582 + GFF81 0.48 +0.5 98,582 + GFF81 0.48 -0.1 98,660 + GFF81 0.61 +1.4 98,660 + GFF81 0.61 +1.8 98,660 + GFF81 0.61 +0.5 98,661 - GFF81 0.61 -0.8 98,661 - GFF81 0.61 -1.4 98,661 - GFF81 0.61 +1.5 98,729 + GFF81 0.72 -2.8 98,730 - GFF81 0.72 +0.9 98,867 + -2.3 98,867 + -2.7 98,868 - -0.8 99,151 + GFF82 0.38 -0.5 99,152 - GFF82 0.38 +0.9 99,152 - GFF82 0.38 +0.3 99,152 - GFF82 0.38 -0.7 99,196 + GFF82 0.45 +1.5 99,196 + GFF82 0.45 +0.5 99,196 + GFF82 0.45 +1.1 99,196 + GFF82 0.45 -1.6 99,197 - GFF82 0.45 -0.6 99,295 + GFF82 0.60 -2.2 99,295 + GFF82 0.60 +0.3 99,295 + GFF82 0.60 -2.9 99,296 - GFF82 0.60 +1.3 99,296 - GFF82 0.60 -1.0 99,296 - GFF82 0.60 +0.3 99,412 + GFF82 0.78 -2.7 99,412 + GFF82 0.78 -0.3 99,412 + GFF82 0.78 -1.2 99,412 + GFF82 0.78 -1.0 99,413 - GFF82 0.78 -1.0 99,413 - GFF82 0.78 -2.8 99,413 - GFF82 0.78 -1.3 99,413 - GFF82 0.78 +0.9 99,960 + GFF83 0.38 +0.8 100,134 + GFF83 0.55 +0.6 100,135 - GFF83 0.55 -2.7 100,404 + GFF83 0.80 -0.0 100,404 + GFF83 0.80 -0.1 100,404 + GFF83 0.80 -2.7 100,404 + GFF83 0.80 -1.3 100,404 + GFF83 0.80 +0.5 100,404 + GFF83 0.80 +0.2 100,405 - GFF83 0.80 -1.0 100,405 - GFF83 0.80 +0.2 100,405 - GFF83 0.80 -0.0 100,695 + -0.5 100,695 + +0.4 100,695 + -1.8 100,695 + -0.0 100,696 - -2.0 100,757 - -0.0 101,110 + GFF84 0.53 -2.0 101,110 + GFF84 0.53 -3.4 101,111 - GFF84 0.53 +0.1 101,420 - -0.3 101,470 + +0.9 101,470 + -0.8 101,471 - -1.9 101,486 + +1.6 101,486 + -1.2 101,487 - -1.6 101,487 - +0.5
Or see this region's nucleotide sequence