Strain Fitness in Variovorax sp. SCN45 around GFF820

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF818 and GFF819 are separated by 4 nucleotidesGFF819 and GFF820 overlap by 4 nucleotidesGFF820 and GFF821 are separated by 203 nucleotides GFF818 - BUG/TctC family periplasmic protein, at 123,392 to 124,402 GFF818 GFF819 - Uncharacterized protein CC_2099, at 124,407 to 124,952 GFF819 GFF820 - Intracellular protease, at 124,949 to 125,596 GFF820 GFF821 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 125,800 to 126,537 GFF821 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 123.968 kb on + strand, within GFF818at 123.969 kb on - strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.585 kb on + strand, within GFF819at 124.756 kb on + strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 125.022 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.043 kb on + strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.597 kb on - strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.661 kb on + strandat 125.661 kb on + strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.730 kb on + strandat 125.750 kb on - strandat 125.750 kb on - strandat 125.779 kb on + strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.782 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.787 kb on + strandat 125.787 kb on + strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.917 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.350 kb on - strand, within GFF821at 126.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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123,968 + GFF818 0.57 -0.4
123,969 - GFF818 0.57 +0.3
124,184 + GFF818 0.78 -1.0
124,184 + GFF818 0.78 +1.0
124,184 + GFF818 0.78 -1.7
124,184 + GFF818 0.78 -0.9
124,184 + GFF818 0.78 -0.8
124,184 + GFF818 0.78 +0.8
124,184 + GFF818 0.78 +0.9
124,184 + GFF818 0.78 -1.6
124,184 + GFF818 0.78 -2.2
124,184 + GFF818 0.78 -3.2
124,184 + GFF818 0.78 -0.5
124,185 - GFF818 0.78 -0.9
124,185 - GFF818 0.78 -0.4
124,185 - GFF818 0.78 -1.5
124,185 - GFF818 0.78 -0.9
124,185 - GFF818 0.78 +0.7
124,185 - GFF818 0.78 +1.3
124,185 - GFF818 0.78 -2.4
124,185 - GFF818 0.78 -2.4
124,185 - GFF818 0.78 -0.0
124,185 - GFF818 0.78 -0.2
124,185 - GFF818 0.78 +0.7
124,185 - GFF818 0.78 -1.6
124,585 + GFF819 0.33 +1.1
124,756 + GFF819 0.64 -2.7
124,757 - GFF819 0.64 +1.7
124,757 - GFF819 0.64 -1.6
124,987 - +0.1
124,987 - -0.9
124,987 - -0.5
124,987 - -0.0
125,022 + GFF820 0.11 -2.3
125,040 + GFF820 0.14 -0.1
125,040 + GFF820 0.14 +0.8
125,041 - GFF820 0.14 +0.1
125,041 - GFF820 0.14 +0.1
125,041 - GFF820 0.14 +0.0
125,043 + GFF820 0.15 +1.1
125,044 - GFF820 0.15 +1.2
125,044 - GFF820 0.15 -0.9
125,044 - GFF820 0.15 -1.2
125,394 + GFF820 0.69 +1.0
125,394 + GFF820 0.69 +0.8
125,394 + GFF820 0.69 -1.3
125,394 + GFF820 0.69 +0.6
125,394 + GFF820 0.69 +0.1
125,394 + GFF820 0.69 -1.6
125,395 - GFF820 0.69 +0.7
125,395 - GFF820 0.69 -2.9
125,395 - GFF820 0.69 -1.5
125,597 - +0.0
125,647 + -1.5
125,647 + -1.0
125,647 + +0.9
125,647 + -0.9
125,647 + -1.3
125,647 + -1.0
125,648 - -3.4
125,648 - -1.5
125,661 + -0.2
125,661 + +1.1
125,662 - +0.6
125,662 - +1.5
125,662 - -0.1
125,730 + -1.3
125,750 - +0.9
125,750 - +1.1
125,779 + -0.9
125,780 - -0.2
125,780 - -3.0
125,780 - -1.2
125,782 + -2.7
125,783 + -2.8
125,783 + -3.0
125,783 + -1.1
125,783 + -0.6
125,783 + +0.7
125,783 + -1.5
125,783 + +0.1
125,784 - -0.9
125,784 - -0.2
125,784 - +1.4
125,784 - +2.4
125,784 - -0.6
125,784 - +1.3
125,784 - -0.3
125,787 + +0.7
125,787 + +0.9
125,788 - +0.2
125,788 - +0.4
125,788 - +2.8
125,818 + -2.5
125,818 + +0.3
125,818 + -0.3
125,818 + +0.7
125,818 + +1.6
125,818 + +0.1
125,818 + -2.0
125,818 + -1.6
125,818 + -0.9
125,818 + +2.2
125,819 - +2.6
125,819 - -1.1
125,819 - -0.3
125,819 - +1.4
125,819 - +0.7
125,917 + GFF821 0.16 -1.7
126,253 + GFF821 0.61 +0.0
126,253 + GFF821 0.61 -0.6
126,253 + GFF821 0.61 +0.1
126,254 - GFF821 0.62 +0.4
126,254 - GFF821 0.62 -0.6
126,350 - GFF821 0.75 +0.5
126,487 + -1.2

Or see this region's nucleotide sequence