Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF789 and GFF790 are separated by 179 nucleotides GFF790 and GFF791 are separated by 7 nucleotides GFF791 and GFF792 are separated by 30 nucleotides
GFF789 - protease Do, at 81,683 to 83,071
GFF789
GFF790 - hypothetical protein, at 83,251 to 83,922
GFF790
GFF791 - RNA polymerase sigma factor RpoE, at 83,930 to 84,466
GFF791
GFF792 - putative FecR, at 84,497 to 85,504
GFF792
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.174 kb on - strand at 83.365 kb on + strand, within GFF790 at 83.365 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.632 kb on + strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.978 kb on + strand at 83.979 kb on - strand at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.137 kb on + strand, within GFF791 at 84.137 kb on + strand, within GFF791 at 84.138 kb on - strand, within GFF791 at 84.465 kb on - strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.846 kb on - strand, within GFF792 at 84.846 kb on - strand, within GFF792 at 85.039 kb on + strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.220 kb on + strand, within GFF792 at 85.220 kb on + strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 83,136 + -2.1 83,136 + -0.6 83,136 + -0.6 83,136 + +1.5 83,136 + +1.0 83,136 + -3.3 83,136 + -0.4 83,136 + +0.9 83,137 - +0.7 83,137 - +0.6 83,137 - -3.2 83,137 - -1.9 83,137 - +0.9 83,137 - +0.8 83,137 - +0.2 83,137 - -2.0 83,174 - -2.7 83,365 + GFF790 0.17 -2.2 83,365 + GFF790 0.17 -2.4 83,503 + GFF790 0.38 -0.5 83,503 + GFF790 0.38 -2.2 83,503 + GFF790 0.38 +2.1 83,504 - GFF790 0.38 +1.3 83,504 - GFF790 0.38 +0.4 83,632 + GFF790 0.57 -3.0 83,633 - GFF790 0.57 -3.9 83,633 - GFF790 0.57 -2.0 83,726 + GFF790 0.71 -1.6 83,726 + GFF790 0.71 -0.9 83,727 - GFF790 0.71 -0.8 83,727 - GFF790 0.71 +0.9 83,727 - GFF790 0.71 +0.5 83,978 + -1.5 83,979 - -2.0 84,107 + GFF791 0.33 -0.9 84,107 + GFF791 0.33 +2.5 84,107 + GFF791 0.33 +0.3 84,107 + GFF791 0.33 +0.2 84,107 + GFF791 0.33 +0.2 84,108 - GFF791 0.33 +2.1 84,108 - GFF791 0.33 -0.5 84,108 - GFF791 0.33 -0.3 84,137 + GFF791 0.39 -0.9 84,137 + GFF791 0.39 -0.1 84,138 - GFF791 0.39 +1.0 84,465 - +1.8 84,496 + -1.1 84,496 + -1.1 84,496 + -1.4 84,496 + -3.0 84,497 - +0.1 84,497 - -0.5 84,497 - -1.1 84,497 - +0.3 84,497 - -0.5 84,497 - -2.1 84,502 + -1.3 84,502 + -1.6 84,502 + +0.8 84,502 + +0.9 84,503 - -1.7 84,503 - -1.6 84,503 - -0.6 84,503 - -0.3 84,846 - GFF792 0.35 +0.8 84,846 - GFF792 0.35 -0.1 85,039 + GFF792 0.54 -0.5 85,040 - GFF792 0.54 -0.1 85,040 - GFF792 0.54 -1.5 85,040 - GFF792 0.54 -1.5 85,040 - GFF792 0.54 -0.9 85,220 + GFF792 0.72 -1.1 85,220 + GFF792 0.72 -1.7 85,221 - GFF792 0.72 -1.3 85,221 - GFF792 0.72 -0.1 85,221 - GFF792 0.72 -0.7 85,454 + +0.1 85,454 + -0.8 85,454 + -0.3 85,454 + +0.1 85,454 + -0.9 85,455 - +0.6 85,455 - +0.1 85,455 - -1.7
Or see this region's nucleotide sequence