Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7321 and GFF7322 are separated by 98 nucleotides GFF7322 and GFF7323 overlap by 4 nucleotides GFF7323 and GFF7324 are separated by 193 nucleotides GFF7324 and GFF7325 are separated by 5 nucleotides
GFF7321 - Sensor histidine kinase GlrK, at 16,122 to 17,549
GFF7321
GFF7322 - hypothetical protein, at 17,648 to 18,259
GFF7322
GFF7323 - Transcriptional response regulatory protein GlrR, at 18,256 to 19,644
GFF7323
GFF7324 - hypothetical protein, at 19,838 to 20,041
GFF7324
GFF7325 - Glucans biosynthesis glucosyltransferase H, at 20,047 to 22,053
GFF7325
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 18.074 kb on + strand, within GFF7322 at 18.074 kb on + strand, within GFF7322 at 18.075 kb on - strand, within GFF7322 at 18.264 kb on + strand at 18.562 kb on + strand, within GFF7323 at 18.562 kb on + strand, within GFF7323 at 18.562 kb on + strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.563 kb on - strand, within GFF7323 at 18.577 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.153 kb on + strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.154 kb on - strand, within GFF7323 at 19.157 kb on - strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.251 kb on + strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.252 kb on - strand, within GFF7323 at 19.258 kb on + strand, within GFF7323 at 19.258 kb on + strand, within GFF7323 at 19.258 kb on + strand, within GFF7323 at 19.259 kb on - strand, within GFF7323 at 19.259 kb on - strand, within GFF7323 at 19.259 kb on - strand, within GFF7323 at 19.259 kb on - strand, within GFF7323 at 19.444 kb on + strand, within GFF7323 at 19.444 kb on + strand, within GFF7323 at 19.444 kb on + strand, within GFF7323 at 19.444 kb on + strand, within GFF7323 at 19.444 kb on + strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.445 kb on - strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.477 kb on + strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.478 kb on - strand, within GFF7323 at 19.558 kb on + strand at 19.558 kb on + strand at 19.559 kb on - strand at 19.654 kb on + strand at 19.654 kb on + strand at 19.655 kb on - strand at 19.655 kb on - strand at 19.655 kb on - strand at 19.655 kb on - strand at 19.655 kb on - strand at 19.655 kb on - strand at 19.670 kb on - strand at 19.757 kb on + strand at 19.758 kb on - strand at 19.831 kb on + strand at 19.831 kb on + strand at 19.832 kb on - strand at 19.832 kb on - strand at 19.832 kb on - strand at 19.934 kb on + strand, within GFF7324 at 19.934 kb on + strand, within GFF7324 at 19.934 kb on + strand, within GFF7324 at 19.935 kb on - strand, within GFF7324 at 19.935 kb on - strand, within GFF7324 at 19.935 kb on - strand, within GFF7324 at 20.039 kb on + strand at 20.039 kb on + strand at 20.039 kb on + strand at 20.039 kb on + strand at 20.040 kb on - strand at 20.040 kb on - strand at 20.040 kb on - strand at 20.040 kb on - strand at 20.383 kb on + strand, within GFF7325 at 20.383 kb on + strand, within GFF7325 at 20.383 kb on + strand, within GFF7325 at 20.383 kb on + strand, within GFF7325 at 20.384 kb on - strand, within GFF7325 at 20.384 kb on - strand, within GFF7325 at 20.422 kb on + strand, within GFF7325 at 20.422 kb on + strand, within GFF7325 at 20.422 kb on + strand, within GFF7325 at 20.422 kb on + strand, within GFF7325 at 20.423 kb on - strand, within GFF7325 at 20.423 kb on - strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.479 kb on + strand, within GFF7325 at 20.480 kb on - strand, within GFF7325 at 20.480 kb on - strand, within GFF7325 at 20.480 kb on - strand, within GFF7325 at 20.480 kb on - strand, within GFF7325
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 17,463 + +2.5 17,463 + -0.3 17,463 + +0.5 17,463 + +2.0 17,463 + +2.0 17,463 + -1.0 17,463 + +0.9 17,463 + +2.6 17,463 + +1.0 17,463 + +0.0 17,463 + +0.8 17,463 + -0.3 17,463 + +0.8 17,464 - +0.5 17,464 - +0.5 17,464 - +0.7 17,464 - -0.4 17,464 - +2.0 17,464 - +1.2 17,464 - -1.5 17,464 - +0.8 17,464 - +1.9 17,464 - +0.5 17,464 - +2.0 17,464 - -1.1 17,843 + GFF7322 0.32 +0.9 17,843 + GFF7322 0.32 +2.0 17,843 + GFF7322 0.32 +0.1 17,843 + GFF7322 0.32 +3.0 17,843 + GFF7322 0.32 +1.0 17,844 - GFF7322 0.32 +1.0 17,844 - GFF7322 0.32 +1.0 17,844 - GFF7322 0.32 -0.5 17,844 - GFF7322 0.32 -2.0 18,074 + GFF7322 0.70 +0.5 18,074 + GFF7322 0.70 +1.7 18,075 - GFF7322 0.70 +0.1 18,264 + -0.1 18,562 + GFF7323 0.22 -1.8 18,562 + GFF7323 0.22 +1.0 18,562 + GFF7323 0.22 +1.0 18,563 - GFF7323 0.22 +0.8 18,563 - GFF7323 0.22 +0.5 18,563 - GFF7323 0.22 -0.5 18,563 - GFF7323 0.22 +1.0 18,563 - GFF7323 0.22 -0.8 18,563 - GFF7323 0.22 +0.0 18,577 + GFF7323 0.23 +3.8 19,153 + GFF7323 0.65 +0.9 19,153 + GFF7323 0.65 +2.5 19,153 + GFF7323 0.65 +0.5 19,153 + GFF7323 0.65 +1.0 19,153 + GFF7323 0.65 +0.5 19,153 + GFF7323 0.65 +0.5 19,153 + GFF7323 0.65 -2.2 19,153 + GFF7323 0.65 -1.0 19,153 + GFF7323 0.65 +2.0 19,153 + GFF7323 0.65 +0.0 19,153 + GFF7323 0.65 +1.0 19,153 + GFF7323 0.65 +0.5 19,153 + GFF7323 0.65 +2.0 19,154 - GFF7323 0.65 +1.5 19,154 - GFF7323 0.65 +1.9 19,154 - GFF7323 0.65 -0.3 19,154 - GFF7323 0.65 -0.5 19,154 - GFF7323 0.65 +0.6 19,154 - GFF7323 0.65 -2.4 19,154 - GFF7323 0.65 +0.5 19,154 - GFF7323 0.65 +1.3 19,154 - GFF7323 0.65 -1.7 19,154 - GFF7323 0.65 +1.6 19,154 - GFF7323 0.65 +3.6 19,154 - GFF7323 0.65 +1.8 19,154 - GFF7323 0.65 +2.6 19,154 - GFF7323 0.65 +2.0 19,154 - GFF7323 0.65 +0.0 19,154 - GFF7323 0.65 -1.4 19,154 - GFF7323 0.65 -2.1 19,154 - GFF7323 0.65 +0.0 19,154 - GFF7323 0.65 +2.0 19,154 - GFF7323 0.65 -0.9 19,157 - GFF7323 0.65 +0.0 19,251 + GFF7323 0.72 +0.3 19,251 + GFF7323 0.72 -0.1 19,251 + GFF7323 0.72 -0.3 19,251 + GFF7323 0.72 +2.4 19,251 + GFF7323 0.72 +0.0 19,251 + GFF7323 0.72 +2.7 19,251 + GFF7323 0.72 +1.3 19,252 - GFF7323 0.72 -1.1 19,252 - GFF7323 0.72 +2.0 19,252 - GFF7323 0.72 -0.5 19,252 - GFF7323 0.72 +2.2 19,252 - GFF7323 0.72 +2.9 19,252 - GFF7323 0.72 -1.1 19,258 + GFF7323 0.72 +0.5 19,258 + GFF7323 0.72 +1.1 19,258 + GFF7323 0.72 -1.0 19,259 - GFF7323 0.72 +0.0 19,259 - GFF7323 0.72 +1.9 19,259 - GFF7323 0.72 +2.0 19,259 - GFF7323 0.72 -2.7 19,444 + GFF7323 0.86 -2.7 19,444 + GFF7323 0.86 -0.5 19,444 + GFF7323 0.86 +4.5 19,444 + GFF7323 0.86 +1.0 19,444 + GFF7323 0.86 +0.3 19,445 - GFF7323 0.86 +0.9 19,445 - GFF7323 0.86 +2.0 19,445 - GFF7323 0.86 +0.1 19,445 - GFF7323 0.86 +2.0 19,445 - GFF7323 0.86 -1.0 19,445 - GFF7323 0.86 -1.1 19,445 - GFF7323 0.86 -0.8 19,445 - GFF7323 0.86 -0.6 19,477 + GFF7323 0.88 -0.5 19,477 + GFF7323 0.88 -2.2 19,477 + GFF7323 0.88 -0.2 19,477 + GFF7323 0.88 -1.0 19,477 + GFF7323 0.88 +3.2 19,477 + GFF7323 0.88 +0.4 19,477 + GFF7323 0.88 +1.0 19,478 - GFF7323 0.88 -0.9 19,478 - GFF7323 0.88 -1.5 19,478 - GFF7323 0.88 -1.4 19,478 - GFF7323 0.88 +0.9 19,478 - GFF7323 0.88 +2.0 19,478 - GFF7323 0.88 -1.5 19,558 + +0.3 19,558 + -0.8 19,559 - +1.3 19,654 + -2.0 19,654 + -1.3 19,655 - +1.6 19,655 - -1.3 19,655 - +2.0 19,655 - -0.9 19,655 - -2.3 19,655 - +0.4 19,670 - -2.9 19,757 + -2.3 19,758 - +0.0 19,831 + +0.8 19,831 + -1.5 19,832 - -3.3 19,832 - +1.9 19,832 - -1.9 19,934 + GFF7324 0.47 -0.0 19,934 + GFF7324 0.47 -1.4 19,934 + GFF7324 0.47 -1.7 19,935 - GFF7324 0.48 -1.0 19,935 - GFF7324 0.48 +2.0 19,935 - GFF7324 0.48 -0.7 20,039 + -3.1 20,039 + -2.1 20,039 + -2.5 20,039 + -3.3 20,040 - -2.8 20,040 - -1.3 20,040 - +0.5 20,040 - -2.1 20,383 + GFF7325 0.17 +4.4 20,383 + GFF7325 0.17 +0.0 20,383 + GFF7325 0.17 -1.5 20,383 + GFF7325 0.17 -0.8 20,384 - GFF7325 0.17 -1.3 20,384 - GFF7325 0.17 +0.0 20,422 + GFF7325 0.19 +0.2 20,422 + GFF7325 0.19 +1.5 20,422 + GFF7325 0.19 -0.8 20,422 + GFF7325 0.19 +1.0 20,423 - GFF7325 0.19 +0.2 20,423 - GFF7325 0.19 +0.5 20,479 + GFF7325 0.22 -1.9 20,479 + GFF7325 0.22 +0.7 20,479 + GFF7325 0.22 +0.7 20,479 + GFF7325 0.22 -0.2 20,479 + GFF7325 0.22 -1.4 20,479 + GFF7325 0.22 +2.4 20,479 + GFF7325 0.22 -0.1 20,479 + GFF7325 0.22 +2.0 20,479 + GFF7325 0.22 -0.3 20,480 - GFF7325 0.22 -2.2 20,480 - GFF7325 0.22 -0.8 20,480 - GFF7325 0.22 +3.6 20,480 - GFF7325 0.22 -0.1
Or see this region's nucleotide sequence