Strain Fitness in Variovorax sp. SCN45 around GFF7255

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7254 and GFF7255 are separated by 228 nucleotidesGFF7255 and GFF7256 are separated by 15 nucleotides GFF7254 - Mannonate dehydratase (EC 4.2.1.8), at 3 to 959 GFF7254 GFF7255 - BUG/TctC family periplasmic protein, at 1,188 to 2,024 GFF7255 GFF7256 - Dehydratase, IlvD/Edd family, at 2,040 to 3,770 GFF7256 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.214 kb on - strand, within GFF7254at 0.214 kb on - strand, within GFF7254at 0.214 kb on - strand, within GFF7254at 0.804 kb on + strand, within GFF7254at 0.805 kb on - strand, within GFF7254at 0.805 kb on - strand, within GFF7254at 0.922 kb on - strandat 1.362 kb on + strand, within GFF7255at 1.515 kb on + strand, within GFF7255at 1.515 kb on + strand, within GFF7255at 2.237 kb on - strand, within GFF7256at 2.797 kb on + strand, within GFF7256at 2.986 kb on - strand, within GFF7256

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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214 - GFF7254 0.22 -0.5
214 - GFF7254 0.22 +0.4
214 - GFF7254 0.22 -1.9
804 + GFF7254 0.84 +0.6
805 - GFF7254 0.84 +1.0
805 - GFF7254 0.84 +1.4
922 - -1.0
1,362 + GFF7255 0.21 -3.2
1,515 + GFF7255 0.39 +0.1
1,515 + GFF7255 0.39 -0.3
2,237 - GFF7256 0.11 -1.9
2,797 + GFF7256 0.44 -0.0
2,986 - GFF7256 0.55 +1.5

Or see this region's nucleotide sequence