Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7230 and GFF7231 are separated by 75 nucleotides GFF7231 and GFF7232 are separated by 13 nucleotides GFF7232 and GFF7233 are separated by 87 nucleotides
GFF7230 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 12,030 to 13,067
GFF7230
GFF7231 - no description, at 13,143 to 13,523
GFF7231
GFF7232 - hypothetical protein, at 13,537 to 14,214
GFF7232
GFF7233 - no description, at 14,302 to 14,532
GFF7233
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 12.330 kb on + strand, within GFF7230 at 12.331 kb on - strand, within GFF7230 at 12.331 kb on - strand, within GFF7230 at 12.331 kb on - strand, within GFF7230 at 12.393 kb on + strand, within GFF7230 at 12.393 kb on + strand, within GFF7230 at 12.394 kb on - strand, within GFF7230 at 12.394 kb on - strand, within GFF7230 at 12.426 kb on + strand, within GFF7230 at 12.426 kb on + strand, within GFF7230 at 12.426 kb on + strand, within GFF7230 at 12.515 kb on + strand, within GFF7230 at 13.378 kb on - strand, within GFF7231 at 13.378 kb on - strand, within GFF7231 at 13.378 kb on - strand, within GFF7231 at 13.547 kb on + strand at 13.547 kb on + strand at 13.597 kb on - strand at 13.597 kb on - strand at 13.597 kb on - strand at 14.268 kb on + strand at 14.268 kb on + strand at 14.268 kb on + strand at 14.268 kb on + strand at 14.360 kb on - strand, within GFF7233
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 12,330 + GFF7230 0.29 -0.0 12,331 - GFF7230 0.29 -1.6 12,331 - GFF7230 0.29 -1.6 12,331 - GFF7230 0.29 +1.1 12,393 + GFF7230 0.35 -0.7 12,393 + GFF7230 0.35 +3.9 12,394 - GFF7230 0.35 -0.4 12,394 - GFF7230 0.35 +1.5 12,426 + GFF7230 0.38 +2.1 12,426 + GFF7230 0.38 +0.9 12,426 + GFF7230 0.38 +0.2 12,515 + GFF7230 0.47 -1.1 13,378 - GFF7231 0.62 -0.9 13,378 - GFF7231 0.62 -1.3 13,378 - GFF7231 0.62 -1.3 13,547 + -2.1 13,547 + -3.0 13,597 - +0.3 13,597 - -1.8 13,597 - +0.0 14,268 + +0.6 14,268 + -1.2 14,268 + -0.7 14,268 + +0.4 14,360 - GFF7233 0.25 -2.3
Or see this region's nucleotide sequence