Strain Fitness in Variovorax sp. SCN45 around GFF7186

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
2,671	-				+0.8
2,671	-				-1.5
2,699	-				-1.1
2,706	+				-2.1
2,707	-				+2.7
2,707	-				+0.7
2,707	-				-2.2
2,745	+				+0.0
2,909	+				-1.4
2,910	-				-0.6
2,910	-				+0.9
2,910	-				-1.2
2,910	-				+0.4
3,030	-				+0.9
3,082	+				-2.0
3,099	+				+1.3
3,099	+				+0.6
3,297	+		GFF7185	0.54	-2.1
3,297	+		GFF7185	0.54	+1.9
3,298	-		GFF7185	0.54	+0.3
3,298	-		GFF7185	0.54	+0.1
3,300	-		GFF7185	0.55	-1.6
3,396	+		GFF7185	0.83	-1.9
3,398	+		GFF7185	0.84	-0.9
3,399	-		GFF7185	0.84	+0.1
3,478	+				-0.8
3,478	+				+0.4
3,478	+				+0.3
3,542	+				-2.2
3,636	-		GFF7186	0.13	+1.6
3,826	+		GFF7186	0.40	-0.7
3,885	-		GFF7186	0.48	-0.4
3,917	+		GFF7186	0.52	+0.7
4,007	+		GFF7186	0.65	-1.8
4,008	-		GFF7186	0.65	+2.2
4,011	+		GFF7186	0.65	+0.5
4,085	+		GFF7186	0.76	-1.2
4,152	-		GFF7186	0.85	+0.5
4,165	-		GFF7186	0.87	+0.4
4,253	-				-0.5
4,321	+				-0.4
4,322	-				-1.9
4,322	-				+0.6
4,633	+				+0.1
4,633	+				-2.3
4,677	+				-2.4
4,677	+				-0.9
4,678	-				+2.2
4,678	-				+0.2
4,899	+		GFF7188	0.24	+0.2
4,900	-		GFF7188	0.24	+0.3
5,149	-		GFF7188	0.51	+0.9
5,149	-		GFF7188	0.51	-1.8