Strain Fitness in Variovorax sp. SCN45 around GFF7046

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7044 and GFF7045 are separated by 22 nucleotidesGFF7045 and GFF7046 are separated by 29 nucleotidesGFF7046 and GFF7047 are separated by 102 nucleotidesGFF7047 and GFF7048 are separated by 2 nucleotides GFF7044 - Inner membrane protein YedI, at 6,037 to 6,945 GFF7044 GFF7045 - hypothetical protein, at 6,968 to 7,180 GFF7045 GFF7046 - FIG00854755: hypothetical protein, at 7,210 to 8,406 GFF7046 GFF7047 - hypothetical protein, at 8,509 to 8,781 GFF7047 GFF7048 - hypothetical protein, at 8,784 to 9,611 GFF7048 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 6.595 kb on + strand, within GFF7044at 6.596 kb on - strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.641 kb on - strand, within GFF7044at 6.970 kb on - strandat 6.970 kb on - strandat 7.048 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.461 kb on - strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.737 kb on - strand, within GFF7046at 8.441 kb on + strandat 8.656 kb on + strand, within GFF7047at 8.656 kb on + strand, within GFF7047at 8.656 kb on + strand, within GFF7047at 8.657 kb on - strand, within GFF7047at 8.743 kb on + strand, within GFF7047at 8.756 kb on - strandat 8.779 kb on + strandat 8.779 kb on + strandat 8.779 kb on + strandat 8.779 kb on + strandat 8.780 kb on - strandat 9.213 kb on + strand, within GFF7048at 9.214 kb on - strand, within GFF7048at 9.404 kb on + strand, within GFF7048at 9.404 kb on + strand, within GFF7048at 9.404 kb on + strand, within GFF7048at 9.405 kb on - strand, within GFF7048at 9.405 kb on - strand, within GFF7048at 9.405 kb on - strand, within GFF7048

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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6,595 + GFF7044 0.61 -1.8
6,596 - GFF7044 0.61 +0.7
6,640 + GFF7044 0.66 -0.6
6,640 + GFF7044 0.66 -0.3
6,641 - GFF7044 0.66 -1.6
6,970 - -0.5
6,970 - +1.7
7,048 + GFF7045 0.38 +0.9
7,050 + GFF7045 0.38 -0.6
7,050 + GFF7045 0.38 -1.5
7,050 + GFF7045 0.38 -0.1
7,050 + GFF7045 0.38 -1.6
7,050 + GFF7045 0.38 +0.4
7,050 + GFF7045 0.38 -0.8
7,051 - GFF7045 0.39 -0.7
7,051 - GFF7045 0.39 -1.3
7,051 - GFF7045 0.39 +1.2
7,051 - GFF7045 0.39 -0.6
7,051 - GFF7045 0.39 +0.4
7,051 - GFF7045 0.39 -0.6
7,337 + GFF7046 0.11 -0.6
7,337 + GFF7046 0.11 -0.7
7,337 + GFF7046 0.11 -0.0
7,337 + GFF7046 0.11 -1.1
7,337 + GFF7046 0.11 +1.9
7,337 + GFF7046 0.11 -0.4
7,337 + GFF7046 0.11 -1.2
7,337 + GFF7046 0.11 -0.6
7,337 + GFF7046 0.11 +1.2
7,338 - GFF7046 0.11 +1.7
7,338 - GFF7046 0.11 -0.1
7,338 - GFF7046 0.11 -1.6
7,338 - GFF7046 0.11 -0.8
7,338 - GFF7046 0.11 +3.0
7,338 - GFF7046 0.11 -4.0
7,338 - GFF7046 0.11 +0.3
7,338 - GFF7046 0.11 +0.7
7,338 - GFF7046 0.11 +0.4
7,338 - GFF7046 0.11 -0.6
7,338 - GFF7046 0.11 +0.7
7,343 + GFF7046 0.11 -1.1
7,343 + GFF7046 0.11 -0.3
7,343 + GFF7046 0.11 -0.8
7,343 + GFF7046 0.11 -1.0
7,343 + GFF7046 0.11 -2.1
7,343 + GFF7046 0.11 +0.6
7,343 + GFF7046 0.11 -0.6
7,343 + GFF7046 0.11 -1.7
7,343 + GFF7046 0.11 -0.5
7,343 + GFF7046 0.11 +1.3
7,343 + GFF7046 0.11 +0.3
7,344 - GFF7046 0.11 -3.0
7,344 - GFF7046 0.11 -0.4
7,344 - GFF7046 0.11 -0.0
7,460 + GFF7046 0.21 +0.2
7,460 + GFF7046 0.21 +0.6
7,461 - GFF7046 0.21 +0.3
7,466 + GFF7046 0.21 -0.2
7,466 + GFF7046 0.21 -0.5
7,467 - GFF7046 0.21 +0.5
7,467 - GFF7046 0.21 +2.1
7,467 - GFF7046 0.21 -0.8
7,700 + GFF7046 0.41 +1.0
7,700 + GFF7046 0.41 +0.0
7,700 + GFF7046 0.41 -1.3
7,700 + GFF7046 0.41 -2.6
7,700 + GFF7046 0.41 -1.2
7,700 + GFF7046 0.41 +0.2
7,701 - GFF7046 0.41 +1.3
7,701 - GFF7046 0.41 +0.1
7,701 - GFF7046 0.41 -0.5
7,701 - GFF7046 0.41 +1.4
7,701 - GFF7046 0.41 -1.3
7,736 + GFF7046 0.44 -0.1
7,736 + GFF7046 0.44 -1.5
7,736 + GFF7046 0.44 -1.6
7,736 + GFF7046 0.44 +1.5
7,737 - GFF7046 0.44 +1.9
8,441 + -0.8
8,656 + GFF7047 0.54 +0.5
8,656 + GFF7047 0.54 +1.3
8,656 + GFF7047 0.54 +0.8
8,657 - GFF7047 0.54 -2.4
8,743 + GFF7047 0.86 -1.1
8,756 - -1.7
8,779 + -0.8
8,779 + -2.5
8,779 + +0.7
8,779 + +1.1
8,780 - -0.6
9,213 + GFF7048 0.52 +0.0
9,214 - GFF7048 0.52 -1.3
9,404 + GFF7048 0.75 -0.2
9,404 + GFF7048 0.75 +3.1
9,404 + GFF7048 0.75 +0.1
9,405 - GFF7048 0.75 -3.1
9,405 - GFF7048 0.75 -0.9
9,405 - GFF7048 0.75 +0.3

Or see this region's nucleotide sequence