Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6968 and GFF6969 are separated by 277 nucleotides GFF6969 and GFF6970 are separated by 126 nucleotides GFF6970 and GFF6971 are separated by 423 nucleotides GFF6971 and GFF6972 are separated by 251 nucleotides
GFF6968 - no description, at 42,350 to 43,948
GFF6968
GFF6969 - hypothetical protein, at 44,226 to 44,558
GFF6969
GFF6970 - Chromate transport protein ChrA, at 44,685 to 45,905
GFF6970
GFF6971 - no description, at 46,329 to 46,454
GFF6971
GFF6972 - no description, at 46,706 to 46,822
GFF6972
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 43.698 kb on + strand, within GFF6968 at 43.699 kb on - strand, within GFF6968 at 44.005 kb on + strand at 44.006 kb on - strand at 44.190 kb on + strand at 44.249 kb on + strand at 44.357 kb on - strand, within GFF6969 at 44.411 kb on - strand, within GFF6969 at 44.452 kb on + strand, within GFF6969 at 44.452 kb on + strand, within GFF6969 at 44.453 kb on - strand, within GFF6969 at 44.453 kb on - strand, within GFF6969 at 44.611 kb on + strand at 44.622 kb on + strand at 44.653 kb on + strand at 44.654 kb on - strand at 44.654 kb on - strand at 44.673 kb on + strand at 44.674 kb on - strand at 44.674 kb on - strand at 44.674 kb on - strand at 44.674 kb on - strand at 44.752 kb on + strand at 44.752 kb on + strand at 44.753 kb on - strand at 44.753 kb on - strand at 44.753 kb on - strand at 44.753 kb on - strand at 44.859 kb on + strand, within GFF6970 at 45.285 kb on + strand, within GFF6970 at 45.286 kb on - strand, within GFF6970 at 45.406 kb on - strand, within GFF6970 at 45.548 kb on + strand, within GFF6970 at 45.549 kb on - strand, within GFF6970 at 45.692 kb on + strand, within GFF6970 at 45.692 kb on + strand, within GFF6970 at 45.759 kb on + strand, within GFF6970 at 45.759 kb on + strand, within GFF6970 at 45.759 kb on + strand, within GFF6970 at 45.837 kb on + strand at 45.863 kb on - strand at 45.974 kb on + strand at 45.975 kb on - strand at 46.110 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.199 kb on - strand at 46.281 kb on - strand at 46.300 kb on - strand at 46.432 kb on + strand, within GFF6971 at 46.432 kb on + strand, within GFF6971 at 46.433 kb on - strand, within GFF6971 at 46.433 kb on - strand, within GFF6971 at 46.556 kb on + strand at 46.556 kb on + strand at 46.568 kb on - strand at 46.568 kb on - strand at 46.570 kb on + strand at 46.570 kb on + strand at 46.570 kb on + strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.593 kb on + strand at 46.594 kb on - strand at 46.630 kb on - strand at 46.630 kb on - strand at 46.734 kb on - strand, within GFF6972 at 46.749 kb on + strand, within GFF6972 at 46.897 kb on + strand at 46.897 kb on + strand at 46.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 43,698 + GFF6968 0.84 -0.1 43,699 - GFF6968 0.84 +1.2 44,005 + -0.8 44,006 - +4.6 44,190 + +1.5 44,249 + -0.0 44,357 - GFF6969 0.39 -0.2 44,411 - GFF6969 0.56 +2.8 44,452 + GFF6969 0.68 +1.1 44,452 + GFF6969 0.68 +2.9 44,453 - GFF6969 0.68 -0.3 44,453 - GFF6969 0.68 -2.8 44,611 + -0.4 44,622 + -0.6 44,653 + -1.1 44,654 - +0.0 44,654 - +0.2 44,673 + -0.0 44,674 - -0.3 44,674 - +0.4 44,674 - +0.9 44,674 - -3.1 44,752 + -1.2 44,752 + +0.1 44,753 - -1.7 44,753 - +0.2 44,753 - +0.5 44,753 - -2.9 44,859 + GFF6970 0.14 -1.2 45,285 + GFF6970 0.49 -1.1 45,286 - GFF6970 0.49 -1.0 45,406 - GFF6970 0.59 +0.6 45,548 + GFF6970 0.71 -0.4 45,549 - GFF6970 0.71 +0.3 45,692 + GFF6970 0.82 -1.7 45,692 + GFF6970 0.82 -0.3 45,759 + GFF6970 0.88 -2.7 45,759 + GFF6970 0.88 +0.7 45,759 + GFF6970 0.88 -2.3 45,837 + +0.6 45,863 - -0.2 45,974 + -2.1 45,975 - +1.5 46,110 + -0.4 46,198 + +0.3 46,198 + -1.8 46,198 + -2.8 46,198 + -1.2 46,199 - -1.6 46,281 - +3.2 46,300 - -0.9 46,432 + GFF6971 0.82 -1.0 46,432 + GFF6971 0.82 -2.7 46,433 - GFF6971 0.83 -1.7 46,433 - GFF6971 0.83 -0.5 46,556 + +0.6 46,556 + -0.5 46,568 - -1.5 46,568 - -0.1 46,570 + -1.1 46,570 + -0.4 46,570 + +0.5 46,571 - -0.4 46,571 - -0.6 46,571 - -0.3 46,571 - -1.6 46,571 - +1.4 46,571 - +0.5 46,593 + +0.0 46,594 - +0.6 46,630 - -0.1 46,630 - +0.8 46,734 - GFF6972 0.24 +0.9 46,749 + GFF6972 0.37 -2.3 46,897 + -0.1 46,897 + +0.2 46,898 - -1.6
Or see this region's nucleotide sequence