Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6949 and GFF6950 are separated by 1 nucleotides GFF6950 and GFF6951 are separated by 99 nucleotides GFF6951 and GFF6952 are separated by 21 nucleotides
GFF6949 - no description, at 25,666 to 26,319
GFF6949
GFF6950 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 26,321 to 27,040
GFF6950
GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129
GFF6951
GFF6952 - Metallo-beta-lactamase family protein, RNA-specific, at 28,151 to 29,503
GFF6952
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 26.252 kb on + strand, within GFF6949 at 26.253 kb on - strand, within GFF6949 at 26.756 kb on + strand, within GFF6950 at 26.757 kb on - strand, within GFF6950 at 26.757 kb on - strand, within GFF6950 at 26.852 kb on + strand, within GFF6950 at 26.853 kb on - strand, within GFF6950 at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.082 kb on + strand at 27.168 kb on + strand at 27.168 kb on + strand at 27.169 kb on - strand at 27.400 kb on - strand, within GFF6951 at 27.459 kb on + strand, within GFF6951 at 27.460 kb on - strand, within GFF6951 at 27.643 kb on + strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.793 kb on + strand, within GFF6951 at 28.049 kb on + strand at 28.050 kb on - strand at 28.368 kb on + strand, within GFF6952 at 28.369 kb on - strand, within GFF6952 at 28.369 kb on - strand, within GFF6952 at 28.650 kb on + strand, within GFF6952 at 28.650 kb on + strand, within GFF6952 at 28.651 kb on - strand, within GFF6952 at 28.659 kb on + strand, within GFF6952 at 28.659 kb on + strand, within GFF6952 at 28.660 kb on - strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.899 kb on + strand, within GFF6952 at 28.899 kb on + strand, within GFF6952 at 28.900 kb on - strand, within GFF6952 at 28.900 kb on - strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.019 kb on - strand, within GFF6952 at 29.019 kb on - strand, within GFF6952
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 26,252 + GFF6949 0.90 +0.5 26,253 - GFF6949 0.90 -0.3 26,756 + GFF6950 0.60 +1.9 26,757 - GFF6950 0.61 +1.5 26,757 - GFF6950 0.61 +2.8 26,852 + GFF6950 0.74 -0.2 26,853 - GFF6950 0.74 +0.1 27,029 + -1.0 27,029 + -0.6 27,029 + -0.0 27,029 + -0.0 27,029 + +0.2 27,030 - -0.2 27,030 - +0.2 27,030 - -1.4 27,030 - -1.0 27,082 + -2.3 27,168 + -1.1 27,168 + -0.8 27,169 - -0.4 27,400 - GFF6951 0.26 -0.3 27,459 + GFF6951 0.32 +0.3 27,460 - GFF6951 0.32 -2.7 27,643 + GFF6951 0.51 -0.3 27,644 - GFF6951 0.51 +0.5 27,644 - GFF6951 0.51 -0.0 27,646 - GFF6951 0.51 -1.1 27,646 - GFF6951 0.51 -1.0 27,734 - GFF6951 0.60 -1.2 27,734 - GFF6951 0.60 +1.1 27,734 - GFF6951 0.60 +0.7 27,734 - GFF6951 0.60 -2.8 27,793 + GFF6951 0.66 -0.8 28,049 + -1.3 28,050 - -0.6 28,368 + GFF6952 0.16 +0.4 28,369 - GFF6952 0.16 -0.6 28,369 - GFF6952 0.16 -0.8 28,650 + GFF6952 0.37 -0.0 28,650 + GFF6952 0.37 +1.3 28,651 - GFF6952 0.37 -1.3 28,659 + GFF6952 0.38 +3.7 28,659 + GFF6952 0.38 -0.3 28,660 - GFF6952 0.38 -0.4 28,878 + GFF6952 0.54 -0.7 28,878 + GFF6952 0.54 -2.0 28,878 + GFF6952 0.54 -1.9 28,879 - GFF6952 0.54 -2.3 28,879 - GFF6952 0.54 +1.4 28,879 - GFF6952 0.54 -1.8 28,899 + GFF6952 0.55 -0.6 28,899 + GFF6952 0.55 -0.6 28,900 - GFF6952 0.55 +0.7 28,900 - GFF6952 0.55 -1.7 29,018 + GFF6952 0.64 -3.0 29,018 + GFF6952 0.64 +0.8 29,018 + GFF6952 0.64 -1.8 29,018 + GFF6952 0.64 -0.7 29,019 - GFF6952 0.64 -0.5 29,019 - GFF6952 0.64 -0.2
Or see this region's nucleotide sequence