Strain Fitness in Variovorax sp. SCN45 around GFF674

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF673 and GFF674 are separated by 78 nucleotidesGFF674 and GFF675 are separated by 10 nucleotidesGFF675 and GFF676 are separated by 33 nucleotides GFF673 - Lysophospholipase L1 and related esterases, at 725,867 to 727,138 GFF673 GFF674 - no description, at 727,217 to 727,438 GFF674 GFF675 - KEGG: 2'-5' RNA ligase , at 727,449 to 727,976 GFF675 GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 Position (kb) 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 726.320 kb on + strand, within GFF673at 726.321 kb on - strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.450 kb on - strand, within GFF673at 726.487 kb on + strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.490 kb on + strand, within GFF673at 726.727 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.912 kb on - strand, within GFF673at 726.912 kb on - strand, within GFF673at 727.082 kb on + strandat 727.082 kb on + strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.148 kb on + strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.151 kb on - strandat 727.155 kb on + strandat 727.155 kb on + strandat 727.156 kb on - strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.163 kb on + strandat 727.163 kb on + strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.168 kb on + strandat 727.169 kb on - strandat 727.356 kb on + strand, within GFF674at 727.487 kb on + strandat 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.962 kb on + strandat 727.962 kb on + strandat 727.998 kb on + strandat 727.999 kb on - strandat 727.999 kb on - strandat 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.264 kb on + strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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726,320 + GFF673 0.36 -2.4
726,321 - GFF673 0.36 -0.0
726,377 + GFF673 0.40 +0.7
726,377 + GFF673 0.40 +1.7
726,377 + GFF673 0.40 -0.8
726,449 + GFF673 0.46 +0.8
726,449 + GFF673 0.46 -2.7
726,449 + GFF673 0.46 -1.5
726,449 + GFF673 0.46 -0.5
726,449 + GFF673 0.46 +0.4
726,450 - GFF673 0.46 -1.8
726,487 + GFF673 0.49 -2.1
726,488 - GFF673 0.49 -2.6
726,488 - GFF673 0.49 +0.3
726,490 + GFF673 0.49 -2.7
726,727 + GFF673 0.68 +0.7
726,911 + GFF673 0.82 -2.2
726,911 + GFF673 0.82 -0.9
726,911 + GFF673 0.82 +0.8
726,911 + GFF673 0.82 +0.3
726,911 + GFF673 0.82 -2.6
726,911 + GFF673 0.82 -0.6
726,912 - GFF673 0.82 -0.7
726,912 - GFF673 0.82 -0.5
727,082 + -0.5
727,082 + +0.1
727,083 - -2.1
727,083 - +0.8
727,083 - +1.1
727,148 + +1.5
727,149 - +0.6
727,149 - +2.2
727,149 - -0.6
727,151 - -0.2
727,155 + -0.1
727,155 + -1.6
727,156 - +0.0
727,159 + +0.5
727,159 + +0.2
727,159 + -0.3
727,160 - +0.7
727,160 - +1.5
727,160 - +0.4
727,160 - +0.2
727,160 - -2.2
727,160 - -0.8
727,163 + +0.0
727,163 + +0.5
727,164 - +0.2
727,164 - -0.0
727,164 - -1.4
727,168 + +0.2
727,169 - -1.3
727,356 + GFF674 0.63 +0.4
727,487 + -0.2
727,590 + GFF675 0.27 -1.0
727,590 + GFF675 0.27 -2.1
727,590 + GFF675 0.27 +1.4
727,591 - GFF675 0.27 +0.4
727,591 - GFF675 0.27 +0.4
727,962 + -0.7
727,962 + +0.8
727,998 + -0.5
727,999 - +1.5
727,999 - +1.5
728,160 + GFF676 0.15 -0.5
728,160 + GFF676 0.15 -0.5
728,160 + GFF676 0.15 +0.7
728,160 + GFF676 0.15 +0.4
728,161 - GFF676 0.15 +0.2
728,161 - GFF676 0.15 -1.1
728,161 - GFF676 0.15 +0.9
728,161 - GFF676 0.15 -0.2
728,161 - GFF676 0.15 -1.3
728,161 - GFF676 0.15 -0.5
728,260 + GFF676 0.25 -0.5
728,260 + GFF676 0.25 -1.9
728,260 + GFF676 0.25 +0.5
728,260 + GFF676 0.25 +0.4
728,260 + GFF676 0.25 -0.9
728,260 + GFF676 0.25 -0.8
728,261 - GFF676 0.25 +1.7
728,261 - GFF676 0.25 +0.4
728,261 - GFF676 0.25 -0.8
728,261 - GFF676 0.25 -0.9
728,261 - GFF676 0.25 +2.0
728,264 + GFF676 0.25 +0.1
728,265 - GFF676 0.25 +0.1
728,265 - GFF676 0.25 +0.3
728,316 + GFF676 0.30 -1.5
728,316 + GFF676 0.30 -1.0
728,316 + GFF676 0.30 -0.1
728,316 + GFF676 0.30 -0.3

Or see this region's nucleotide sequence