Strain Fitness in Variovorax sp. SCN45 around GFF6609

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6607 and GFF6608 are separated by 26 nucleotidesGFF6608 and GFF6609 are separated by 83 nucleotidesGFF6609 and GFF6610 are separated by 335 nucleotidesGFF6610 and GFF6611 are separated by 312 nucleotides GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 GFF6608 - hypothetical protein, at 52,317 to 52,598 GFF6608 GFF6609 - FIG00957806: hypothetical protein, at 52,682 to 53,434 GFF6609 GFF6610 - putative lipoprotein, at 53,770 to 54,120 GFF6610 GFF6611 - Transcriptional regulator, Xre family, at 54,433 to 54,726 GFF6611 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.702 kb on - strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.924 kb on - strand, within GFF6607at 51.939 kb on + strand, within GFF6607at 51.940 kb on - strand, within GFF6607at 52.354 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.534 kb on + strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.613 kb on + strandat 52.613 kb on + strandat 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.182 kb on - strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.388 kb on + strandat 53.388 kb on + strandat 53.389 kb on - strandat 53.404 kb on - strandat 53.487 kb on - strandat 53.487 kb on - strandat 53.499 kb on + strandat 53.500 kb on - strandat 53.523 kb on - strandat 53.523 kb on - strandat 53.552 kb on - strandat 53.560 kb on + strandat 53.560 kb on + strandat 53.582 kb on + strandat 53.583 kb on - strandat 53.604 kb on + strandat 53.740 kb on + strandat 53.740 kb on + strandat 53.740 kb on + strandat 53.811 kb on - strand, within GFF6610at 53.840 kb on + strand, within GFF6610at 53.840 kb on + strand, within GFF6610at 53.840 kb on + strand, within GFF6610at 53.841 kb on - strand, within GFF6610at 53.986 kb on + strand, within GFF6610at 54.192 kb on + strandat 54.192 kb on + strandat 54.192 kb on + strandat 54.192 kb on + strandat 54.192 kb on + strandat 54.193 kb on - strandat 54.193 kb on - strandat 54.193 kb on - strandat 54.193 kb on - strandat 54.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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51,702 - GFF6607 0.32 -0.6
51,749 + GFF6607 0.37 -0.8
51,749 + GFF6607 0.37 +2.2
51,749 + GFF6607 0.37 -0.5
51,749 + GFF6607 0.37 +0.2
51,750 - GFF6607 0.38 +0.4
51,750 - GFF6607 0.38 +0.5
51,750 - GFF6607 0.38 -0.4
51,750 - GFF6607 0.38 -2.1
51,924 - GFF6607 0.58 +2.1
51,939 + GFF6607 0.59 +1.2
51,940 - GFF6607 0.60 -0.7
52,354 + GFF6608 0.13 +0.6
52,420 + GFF6608 0.37 -2.2
52,420 + GFF6608 0.37 +1.8
52,420 + GFF6608 0.37 +0.3
52,420 + GFF6608 0.37 -1.7
52,420 + GFF6608 0.37 +0.1
52,421 - GFF6608 0.37 +0.3
52,421 - GFF6608 0.37 +0.3
52,421 - GFF6608 0.37 +0.9
52,421 - GFF6608 0.37 +1.9
52,507 + GFF6608 0.67 -2.8
52,507 + GFF6608 0.67 -0.3
52,507 + GFF6608 0.67 -1.2
52,534 + GFF6608 0.77 -1.3
52,535 - GFF6608 0.77 +0.1
52,535 - GFF6608 0.77 -1.0
52,535 - GFF6608 0.77 +3.3
52,535 - GFF6608 0.77 -0.7
52,613 + +1.1
52,613 + -1.5
53,010 + GFF6609 0.44 +0.2
53,010 + GFF6609 0.44 +0.5
53,010 + GFF6609 0.44 +0.3
53,011 - GFF6609 0.44 -0.4
53,011 - GFF6609 0.44 -1.1
53,011 - GFF6609 0.44 +0.7
53,182 - GFF6609 0.66 +1.5
53,343 + GFF6609 0.88 -0.5
53,343 + GFF6609 0.88 -0.7
53,343 + GFF6609 0.88 -1.1
53,382 + -2.6
53,382 + +0.5
53,382 + +1.9
53,382 + -1.1
53,382 + +0.0
53,382 + -2.1
53,383 - +0.0
53,383 - -0.4
53,383 - -0.8
53,383 - -0.7
53,383 - +0.9
53,383 - -1.0
53,383 - -0.3
53,388 + +0.4
53,388 + -1.6
53,389 - -0.5
53,404 - +0.8
53,487 - +1.0
53,487 - -2.1
53,499 + -2.0
53,500 - -0.2
53,523 - -1.4
53,523 - +0.9
53,552 - +1.6
53,560 + -1.0
53,560 + -3.5
53,582 + +0.2
53,583 - -2.4
53,604 + -0.8
53,740 + -0.3
53,740 + -1.0
53,740 + +0.0
53,811 - GFF6610 0.12 +1.3
53,840 + GFF6610 0.20 +0.0
53,840 + GFF6610 0.20 -1.1
53,840 + GFF6610 0.20 +0.8
53,841 - GFF6610 0.20 -2.3
53,986 + GFF6610 0.62 +0.2
54,192 + +0.8
54,192 + -0.3
54,192 + +1.2
54,192 + +2.7
54,192 + -2.1
54,193 - -0.4
54,193 - +0.1
54,193 - -1.0
54,193 - -0.5
54,311 - -0.1

Or see this region's nucleotide sequence