Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6598 and GFF6599 are separated by 82 nucleotides GFF6599 and GFF6600 overlap by 4 nucleotides GFF6600 and GFF6601 overlap by 15 nucleotides
GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472
GFF6598
GFF6599 - NAD-dependent formate dehydrogenase alpha subunit, at 45,555 to 45,800
GFF6599
GFF6600 - Sulfur carrier protein FdhD, at 45,797 to 46,732
GFF6600
GFF6601 - Type IV secretory pathway, VirD2 components (relaxase), at 46,718 to 48,703
GFF6601
Position (kb) 45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 44.976 kb on - strand, within GFF6598 at 44.976 kb on - strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.072 kb on + strand, within GFF6598 at 45.073 kb on - strand, within GFF6598 at 45.073 kb on - strand, within GFF6598 at 45.074 kb on + strand, within GFF6598 at 45.075 kb on - strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.152 kb on + strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.153 kb on - strand, within GFF6598 at 45.167 kb on + strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.168 kb on - strand, within GFF6598 at 45.363 kb on - strand at 45.363 kb on - strand at 45.366 kb on - strand at 45.387 kb on + strand at 45.388 kb on - strand at 45.388 kb on - strand at 45.428 kb on + strand at 45.429 kb on - strand at 45.429 kb on - strand at 45.429 kb on - strand at 45.498 kb on + strand at 45.498 kb on + strand at 45.498 kb on + strand at 45.499 kb on - strand at 45.499 kb on - strand at 45.513 kb on + strand at 45.545 kb on + strand at 45.545 kb on + strand at 45.546 kb on - strand at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.666 kb on + strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.667 kb on - strand, within GFF6599 at 45.726 kb on + strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.811 kb on + strand at 46.031 kb on + strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.170 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.687 kb on + strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.720 kb on - strand at 46.778 kb on + strand at 46.778 kb on + strand at 46.779 kb on - strand at 46.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 44,976 - GFF6598 0.78 -1.8 44,976 - GFF6598 0.78 +0.7 45,072 + GFF6598 0.82 -0.1 45,072 + GFF6598 0.82 -0.5 45,072 + GFF6598 0.82 +0.0 45,073 - GFF6598 0.82 +0.3 45,073 - GFF6598 0.82 +0.6 45,074 + GFF6598 0.82 -1.5 45,075 - GFF6598 0.83 +0.4 45,152 + GFF6598 0.86 -1.1 45,152 + GFF6598 0.86 -0.5 45,152 + GFF6598 0.86 -0.2 45,152 + GFF6598 0.86 -1.3 45,152 + GFF6598 0.86 -1.3 45,153 - GFF6598 0.86 +0.7 45,153 - GFF6598 0.86 -0.1 45,153 - GFF6598 0.86 -1.6 45,153 - GFF6598 0.86 +0.1 45,167 + GFF6598 0.87 +1.5 45,168 - GFF6598 0.87 -1.6 45,168 - GFF6598 0.87 +0.2 45,168 - GFF6598 0.87 -0.7 45,168 - GFF6598 0.87 -0.2 45,363 - -0.0 45,363 - +0.4 45,366 - -2.4 45,387 + -1.1 45,388 - -1.1 45,388 - +1.7 45,428 + -2.1 45,429 - -0.1 45,429 - +0.3 45,429 - -1.6 45,498 + -1.8 45,498 + -2.8 45,498 + -1.0 45,499 - -0.6 45,499 - +0.9 45,513 + -1.5 45,545 + -2.0 45,545 + -1.1 45,546 - +0.0 45,666 + GFF6599 0.45 +0.0 45,666 + GFF6599 0.45 -0.7 45,666 + GFF6599 0.45 -1.6 45,666 + GFF6599 0.45 +0.4 45,666 + GFF6599 0.45 +1.2 45,667 - GFF6599 0.46 +1.0 45,667 - GFF6599 0.46 -1.0 45,667 - GFF6599 0.46 -1.7 45,667 - GFF6599 0.46 -1.0 45,726 + GFF6599 0.70 -1.5 45,727 - GFF6599 0.70 -2.3 45,727 - GFF6599 0.70 +0.8 45,811 + +0.2 46,031 + GFF6600 0.25 -2.0 46,032 - GFF6600 0.25 +1.3 46,032 - GFF6600 0.25 +1.2 46,170 + GFF6600 0.40 -0.8 46,588 + GFF6600 0.85 -0.9 46,588 + GFF6600 0.85 -1.6 46,588 + GFF6600 0.85 -1.1 46,687 + -1.0 46,688 - -0.7 46,688 - -1.1 46,688 - +1.2 46,719 + -0.6 46,719 + +1.2 46,719 + -2.9 46,719 + +0.9 46,720 - -1.3 46,778 + -2.7 46,778 + -0.1 46,779 - +1.6 46,779 - -2.7
Or see this region's nucleotide sequence