Strain Fitness in Variovorax sp. SCN45 around GFF6588

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
29,086	+				-0.1
29,086	+				-0.2
29,086	+				-0.5
29,086	+				+0.0
29,087	-				-2.1
29,087	-				-1.8
29,087	-				-1.1
29,087	-				+0.4
29,087	-				+0.7
29,116	+				-1.1
29,117	-				-1.6
29,173	+				-2.0
29,174	-				-1.2
29,309	-		GFF6587	0.25	+0.9
29,309	-		GFF6587	0.25	+0.7
29,309	-		GFF6587	0.25	-3.1
29,356	+		GFF6587	0.31	-0.5
29,356	+		GFF6587	0.31	-1.0
29,356	+		GFF6587	0.31	+0.1
29,356	+		GFF6587	0.31	-1.5
29,356	+		GFF6587	0.31	+0.5
29,356	+		GFF6587	0.31	-0.1
29,356	+		GFF6587	0.31	-0.8
29,357	-		GFF6587	0.31	-0.1
29,357	-		GFF6587	0.31	-0.7
29,357	-		GFF6587	0.31	-0.2
29,365	+		GFF6587	0.32	-1.6
29,365	+		GFF6587	0.32	-2.5
29,366	-		GFF6587	0.32	+0.6
29,434	+		GFF6587	0.41	-0.7
29,434	+		GFF6587	0.41	+0.7
29,434	+		GFF6587	0.41	-1.9
29,435	-		GFF6587	0.41	-1.3
29,435	-		GFF6587	0.41	-1.6
29,676	+		GFF6587	0.72	-0.5
29,676	+		GFF6587	0.72	+0.9
29,677	-		GFF6587	0.72	+3.2
29,901	+				+2.9
29,901	+				-2.5
29,902	-				+1.0
29,907	+				-0.1
30,302	+		GFF6588	0.18	+0.5
30,302	+		GFF6588	0.18	-0.1
30,302	+		GFF6588	0.18	-2.6
30,302	+		GFF6588	0.18	+0.9
30,303	-		GFF6588	0.18	-2.1
30,303	-		GFF6588	0.18	+1.7
30,303	-		GFF6588	0.18	+1.4
30,303	-		GFF6588	0.18	-1.8
30,374	+		GFF6588	0.22	+1.4
30,551	+		GFF6588	0.32	+0.7
30,551	+		GFF6588	0.32	-2.7
30,552	-		GFF6588	0.32	+2.9
30,605	+		GFF6588	0.35	+0.4
30,667	+		GFF6588	0.38	+0.2
30,667	+		GFF6588	0.38	-0.8
30,667	+		GFF6588	0.38	+0.9
30,737	+		GFF6588	0.42	-1.4
30,738	-		GFF6588	0.42	-0.7
30,896	+		GFF6588	0.51	+2.0
30,896	+		GFF6588	0.51	-1.0
30,896	+		GFF6588	0.51	+1.4
30,897	-		GFF6588	0.51	+0.3
30,897	-		GFF6588	0.51	+1.3
30,897	-		GFF6588	0.51	+0.7
30,897	-		GFF6588	0.51	-2.8
30,897	-		GFF6588	0.51	-2.5
30,949	+		GFF6588	0.54	+1.8
31,180	+		GFF6588	0.67	-0.1
31,221	-		GFF6588	0.69	-2.4
31,239	-		GFF6588	0.70	-0.5
31,242	+		GFF6588	0.70	-1.7
31,243	-		GFF6588	0.71	-2.3
31,442	+		GFF6588	0.82	+1.2
31,442	+		GFF6588	0.82	+0.4
31,508	+		GFF6588	0.85	-1.1
31,589	+		GFF6588	0.90	-1.1
31,671	-				-1.5
31,862	+				-1.3
31,863	-				+1.7
31,903	+				+0.8
31,932	-				+1.3
32,043	-		GFF6589	0.13	-2.1
32,043	-		GFF6589	0.13	-1.1
32,105	-		GFF6589	0.20	-0.1
32,107	+		GFF6589	0.20	-0.8
32,187	+		GFF6589	0.28	+0.9
32,188	-		GFF6589	0.28	-1.5
32,188	-		GFF6589	0.28	-3.8
32,202	+		GFF6589	0.30	+0.4
32,202	+		GFF6589	0.30	-0.4
32,202	+		GFF6589	0.30	-0.1
32,202	+		GFF6589	0.30	-0.5
32,203	-		GFF6589	0.30	-0.7
32,203	-		GFF6589	0.30	+1.9
32,203	-		GFF6589	0.30	+0.8
32,303	-		GFF6589	0.40	+2.0
32,303	-		GFF6589	0.40	-0.2
32,303	-		GFF6589	0.40	-1.8
32,380	+		GFF6589	0.48	+0.2
32,380	+		GFF6589	0.48	-0.3
32,381	-		GFF6589	0.48	+0.6
32,423	-		GFF6589	0.52	-1.1
32,485	+		GFF6589	0.59	+1.5
32,485	+		GFF6589	0.59	-1.0
32,486	-		GFF6589	0.59	+0.3
32,486	-		GFF6589	0.59	+0.9
32,638	+		GFF6589	0.74	-1.8
32,638	+		GFF6589	0.74	-3.1
32,639	-		GFF6589	0.75	+0.1
32,675	+		GFF6589	0.78	-1.5
32,676	-		GFF6589	0.78	-0.4
32,725	+		GFF6589	0.83	-0.3
32,725	+		GFF6589	0.83	-2.3