Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6579 and GFF6580 overlap by 4 nucleotides GFF6580 and GFF6581 overlap by 4 nucleotides GFF6581 and GFF6582 are separated by 217 nucleotides GFF6582 and GFF6583 are separated by 24 nucleotides
GFF6579 - Conjugative transfer protein TrbB, at 20,176 to 21,213
GFF6579
GFF6580 - CopG domain-containing protein, at 21,210 to 21,674
GFF6580
GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680
GFF6581
GFF6582 - Conjugative transfer protein TrbK, at 23,898 to 24,125
GFF6582
GFF6583 - Transcriptional regulator, LysR family, at 24,150 to 25,064
GFF6583
Position (kb) 21
22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.826 kb on - strand, within GFF6579 at 21.213 kb on + strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.258 kb on - strand, within GFF6580 at 21.424 kb on + strand, within GFF6580 at 21.425 kb on - strand, within GFF6580 at 21.674 kb on + strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.820 kb on - strand at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 22.035 kb on + strand, within GFF6581 at 22.198 kb on - strand, within GFF6581 at 22.198 kb on - strand, within GFF6581 at 22.326 kb on + strand, within GFF6581 at 22.326 kb on + strand, within GFF6581 at 22.327 kb on - strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.897 kb on - strand, within GFF6581 at 23.055 kb on + strand, within GFF6581 at 23.055 kb on + strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.192 kb on + strand, within GFF6581 at 23.193 kb on - strand, within GFF6581 at 23.268 kb on + strand, within GFF6581 at 23.269 kb on - strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.361 kb on + strand, within GFF6581 at 23.362 kb on - strand, within GFF6581 at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.570 kb on + strand at 23.899 kb on + strand at 23.899 kb on + strand at 23.900 kb on - strand at 23.900 kb on - strand at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.306 kb on + strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.500 kb on - strand, within GFF6583 at 24.530 kb on + strand, within GFF6583 at 24.531 kb on - strand, within GFF6583 at 24.532 kb on + strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 20,825 + GFF6579 0.63 -1.8 20,825 + GFF6579 0.63 -0.5 20,825 + GFF6579 0.63 +0.3 20,825 + GFF6579 0.63 +0.3 20,826 - GFF6579 0.63 +0.0 21,213 + -0.5 21,214 - +0.3 21,214 - +0.3 21,214 - -4.3 21,214 - -2.1 21,258 - GFF6580 0.10 -0.7 21,424 + GFF6580 0.46 -2.1 21,425 - GFF6580 0.46 -0.4 21,674 + +0.3 21,675 - +0.5 21,675 - -1.3 21,675 - -2.4 21,820 - -0.6 21,887 + GFF6581 0.11 +0.3 21,887 + GFF6581 0.11 -2.1 21,887 + GFF6581 0.11 -0.5 21,887 + GFF6581 0.11 +1.9 21,887 + GFF6581 0.11 -1.8 21,887 + GFF6581 0.11 -1.0 21,887 + GFF6581 0.11 -0.6 21,888 - GFF6581 0.11 -2.7 21,888 - GFF6581 0.11 -2.1 21,888 - GFF6581 0.11 -1.0 21,888 - GFF6581 0.11 +0.1 21,888 - GFF6581 0.11 +0.9 21,888 - GFF6581 0.11 -2.1 22,035 + GFF6581 0.18 -1.4 22,198 - GFF6581 0.26 -1.8 22,198 - GFF6581 0.26 -1.9 22,326 + GFF6581 0.33 -1.4 22,326 + GFF6581 0.33 -1.5 22,327 - GFF6581 0.33 +0.4 22,584 + GFF6581 0.45 -0.5 22,584 + GFF6581 0.45 +0.1 22,584 + GFF6581 0.45 +2.1 22,585 - GFF6581 0.45 -0.2 22,585 - GFF6581 0.45 -3.5 22,585 - GFF6581 0.45 +0.4 22,585 - GFF6581 0.45 +0.5 22,897 - GFF6581 0.61 +0.5 23,055 + GFF6581 0.69 -2.1 23,055 + GFF6581 0.69 +0.7 23,056 - GFF6581 0.69 +1.7 23,056 - GFF6581 0.69 +1.4 23,056 - GFF6581 0.69 +0.6 23,056 - GFF6581 0.69 -0.1 23,056 - GFF6581 0.69 -0.5 23,056 - GFF6581 0.69 +0.9 23,192 + GFF6581 0.76 -0.1 23,193 - GFF6581 0.76 +1.9 23,268 + GFF6581 0.79 +1.3 23,269 - GFF6581 0.80 -0.0 23,294 + GFF6581 0.81 -0.1 23,294 + GFF6581 0.81 +0.3 23,294 + GFF6581 0.81 -1.0 23,361 + GFF6581 0.84 -0.7 23,362 - GFF6581 0.84 -1.1 23,527 - -1.6 23,527 - -0.5 23,527 - +1.8 23,527 - -0.7 23,527 - -0.7 23,570 + +0.0 23,899 + -0.8 23,899 + +0.4 23,900 - -0.7 23,900 - -0.1 24,256 + GFF6583 0.12 -0.3 24,256 + GFF6583 0.12 -1.7 24,256 + GFF6583 0.12 +0.7 24,306 + GFF6583 0.17 -0.7 24,307 - GFF6583 0.17 -1.1 24,307 - GFF6583 0.17 -1.5 24,336 - GFF6583 0.20 -0.8 24,336 - GFF6583 0.20 +0.2 24,389 - GFF6583 0.26 -0.1 24,389 - GFF6583 0.26 -2.3 24,389 - GFF6583 0.26 -1.5 24,500 - GFF6583 0.38 -1.6 24,530 + GFF6583 0.42 -2.6 24,531 - GFF6583 0.42 -2.9 24,532 + GFF6583 0.42 -2.1 24,533 - GFF6583 0.42 +1.9 24,533 - GFF6583 0.42 -0.6 24,644 - GFF6583 0.54 +0.8 24,644 - GFF6583 0.54 -0.1
Or see this region's nucleotide sequence