Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF656 and GFF657 are separated by 253 nucleotides GFF657 and GFF658 are separated by 264 nucleotides
GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935
GFF656
GFF657 - no description, at 709,189 to 709,365
GFF657
GFF658 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 709,630 to 710,646
GFF658
Position (kb) 709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.217 kb on + strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.218 kb on - strand, within GFF656 at 708.394 kb on + strand, within GFF656 at 708.394 kb on + strand, within GFF656 at 708.394 kb on + strand, within GFF656 at 708.395 kb on - strand, within GFF656 at 708.395 kb on - strand, within GFF656 at 708.643 kb on + strand, within GFF656 at 708.643 kb on + strand, within GFF656 at 708.643 kb on + strand, within GFF656 at 708.643 kb on + strand, within GFF656 at 708.643 kb on + strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.644 kb on - strand, within GFF656 at 708.753 kb on - strand at 708.949 kb on + strand at 709.117 kb on + strand at 709.118 kb on - strand at 709.118 kb on - strand at 709.118 kb on - strand at 709.364 kb on - strand at 709.429 kb on + strand at 709.470 kb on + strand at 709.471 kb on - strand at 709.518 kb on + strand at 709.518 kb on + strand at 709.518 kb on + strand at 709.519 kb on - strand at 709.519 kb on - strand at 709.553 kb on + strand at 709.554 kb on - strand at 709.554 kb on - strand at 709.554 kb on - strand at 709.554 kb on - strand at 709.631 kb on + strand at 709.631 kb on + strand at 709.789 kb on - strand, within GFF658 at 710.240 kb on + strand, within GFF658 at 710.240 kb on + strand, within GFF658 at 710.240 kb on + strand, within GFF658 at 710.240 kb on + strand, within GFF658 at 710.241 kb on - strand, within GFF658 at 710.241 kb on - strand, within GFF658 at 710.241 kb on - strand, within GFF658 at 710.241 kb on - strand, within GFF658 at 710.241 kb on - strand, within GFF658 at 710.241 kb on - strand, within GFF658
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 708,217 + GFF656 0.68 -1.1 708,217 + GFF656 0.68 -0.8 708,217 + GFF656 0.68 +1.4 708,217 + GFF656 0.68 -0.4 708,217 + GFF656 0.68 +0.6 708,217 + GFF656 0.68 -2.3 708,217 + GFF656 0.68 +0.0 708,217 + GFF656 0.68 -1.8 708,217 + GFF656 0.68 +1.5 708,218 - GFF656 0.68 -0.1 708,218 - GFF656 0.68 +0.6 708,218 - GFF656 0.68 -1.8 708,218 - GFF656 0.68 -1.4 708,218 - GFF656 0.68 +0.3 708,218 - GFF656 0.68 -2.7 708,218 - GFF656 0.68 -1.7 708,394 + GFF656 0.76 +3.7 708,394 + GFF656 0.76 -0.1 708,394 + GFF656 0.76 -3.4 708,395 - GFF656 0.76 -0.9 708,395 - GFF656 0.76 -2.6 708,643 + GFF656 0.87 -0.5 708,643 + GFF656 0.87 -2.1 708,643 + GFF656 0.87 -3.4 708,643 + GFF656 0.87 -0.1 708,643 + GFF656 0.87 -0.8 708,644 - GFF656 0.87 +0.6 708,644 - GFF656 0.87 -0.2 708,644 - GFF656 0.87 +0.6 708,644 - GFF656 0.87 +0.5 708,644 - GFF656 0.87 +4.0 708,644 - GFF656 0.87 -1.3 708,644 - GFF656 0.87 -0.3 708,644 - GFF656 0.87 -1.2 708,753 - -0.8 708,949 + +0.3 709,117 + +2.0 709,118 - +0.3 709,118 - +1.2 709,118 - +1.0 709,364 - +1.3 709,429 + -0.1 709,470 + -0.1 709,471 - -0.8 709,518 + -0.5 709,518 + +2.8 709,518 + +0.2 709,519 - -0.5 709,519 - +1.3 709,553 + +0.5 709,554 - -1.5 709,554 - -0.5 709,554 - +0.7 709,554 - -3.2 709,631 + -0.3 709,631 + -2.7 709,789 - GFF658 0.16 -0.4 710,240 + GFF658 0.60 +1.4 710,240 + GFF658 0.60 -0.3 710,240 + GFF658 0.60 -2.1 710,240 + GFF658 0.60 -0.1 710,241 - GFF658 0.60 -1.7 710,241 - GFF658 0.60 -1.5 710,241 - GFF658 0.60 +0.4 710,241 - GFF658 0.60 -2.6 710,241 - GFF658 0.60 +0.0 710,241 - GFF658 0.60 -0.6
Or see this region's nucleotide sequence