Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6563 and GFF6564 overlap by 4 nucleotides GFF6564 and GFF6565 are separated by 300 nucleotides
GFF6563 - no description, at 85 to 945
GFF6563
GFF6564 - hypothetical protein, at 942 to 3,197
GFF6564
GFF6565 - hypothetical protein, at 3,498 to 4,742
GFF6565
Position (kb) 0
1
2
3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 0.100 kb on + strand at 0.100 kb on + strand at 0.100 kb on + strand at 0.101 kb on - strand at 0.101 kb on - strand at 0.101 kb on - strand at 0.123 kb on - strand at 0.150 kb on - strand at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.249 kb on - strand, within GFF6563 at 0.249 kb on - strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.399 kb on - strand, within GFF6563 at 0.399 kb on - strand, within GFF6563 at 0.541 kb on + strand, within GFF6563 at 0.655 kb on + strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.871 kb on + strand at 0.872 kb on - strand at 0.878 kb on + strand at 0.878 kb on + strand at 0.878 kb on + strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.883 kb on - strand at 1.054 kb on + strand at 1.054 kb on + strand at 1.055 kb on - strand at 1.055 kb on - strand at 1.084 kb on - strand at 1.120 kb on + strand at 1.120 kb on + strand at 1.120 kb on + strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.123 kb on + strand at 1.123 kb on + strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.130 kb on + strand at 1.130 kb on + strand at 1.131 kb on - strand at 1.150 kb on + strand at 1.150 kb on + strand at 1.150 kb on + strand at 1.151 kb on - strand at 1.325 kb on + strand, within GFF6564 at 1.326 kb on - strand, within GFF6564 at 1.340 kb on + strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.371 kb on + strand, within GFF6564 at 1.402 kb on - strand, within GFF6564 at 1.419 kb on + strand, within GFF6564 at 1.419 kb on + strand, within GFF6564 at 1.420 kb on - strand, within GFF6564 at 1.586 kb on + strand, within GFF6564 at 1.587 kb on - strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.824 kb on - strand, within GFF6564 at 1.824 kb on - strand, within GFF6564 at 1.847 kb on + strand, within GFF6564 at 1.848 kb on - strand, within GFF6564 at 1.881 kb on + strand, within GFF6564 at 1.882 kb on - strand, within GFF6564 at 1.934 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.224 kb on - strand, within GFF6564 at 2.224 kb on - strand, within GFF6564 at 2.243 kb on + strand, within GFF6564 at 2.261 kb on - strand, within GFF6564 at 2.267 kb on + strand, within GFF6564 at 2.289 kb on + strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.381 kb on + strand, within GFF6564 at 2.381 kb on + strand, within GFF6564 at 2.382 kb on - strand, within GFF6564 at 2.382 kb on - strand, within GFF6564 at 2.451 kb on + strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.580 kb on + strand, within GFF6564 at 2.581 kb on - strand, within GFF6564 at 2.581 kb on - strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.845 kb on - strand, within GFF6564 at 2.848 kb on + strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.982 kb on + strand at 2.982 kb on + strand at 2.983 kb on - strand at 2.983 kb on - strand at 3.025 kb on - strand at 3.063 kb on + strand at 3.063 kb on + strand at 3.064 kb on - strand at 3.064 kb on - strand at 3.067 kb on + strand at 3.068 kb on - strand at 3.102 kb on + strand at 3.102 kb on + strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.349 kb on + strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.377 kb on - strand at 3.426 kb on + strand at 3.529 kb on + strand at 3.529 kb on + strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.652 kb on - strand, within GFF6565 at 3.652 kb on - strand, within GFF6565 at 3.705 kb on + strand, within GFF6565 at 3.714 kb on + strand, within GFF6565 at 3.714 kb on + strand, within GFF6565 at 3.846 kb on - strand, within GFF6565 at 4.150 kb on - strand, within GFF6565 at 4.150 kb on - strand, within GFF6565 at 4.166 kb on - strand, within GFF6565
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 100 + +0.8 100 + -0.7 100 + +0.0 101 - +0.3 101 - +0.3 101 - +0.3 123 - -0.2 150 - -0.9 248 + GFF6563 0.19 -1.3 248 + GFF6563 0.19 +0.9 248 + GFF6563 0.19 -1.2 248 + GFF6563 0.19 -0.5 249 - GFF6563 0.19 +0.2 249 - GFF6563 0.19 -0.2 398 + GFF6563 0.36 +1.1 398 + GFF6563 0.36 -2.6 398 + GFF6563 0.36 -1.7 399 - GFF6563 0.36 -1.8 399 - GFF6563 0.36 +1.7 541 + GFF6563 0.53 -2.2 655 + GFF6563 0.66 -2.4 656 - GFF6563 0.66 -0.5 656 - GFF6563 0.66 +0.8 656 - GFF6563 0.66 -1.8 656 - GFF6563 0.66 -1.6 656 - GFF6563 0.66 -1.5 871 + +2.5 872 - +2.6 878 + -1.9 878 + +0.7 878 + +3.7 879 - +1.0 879 - +1.3 879 - +1.2 879 - +0.9 879 - -0.7 879 - -0.2 883 - +1.2 1,054 + -1.3 1,054 + -0.4 1,055 - -1.5 1,055 - +0.8 1,084 - -0.5 1,120 + -0.7 1,120 + -2.1 1,120 + -0.2 1,121 - +0.9 1,121 - -2.1 1,121 - -0.6 1,121 - +1.4 1,121 - -0.5 1,123 + +0.9 1,123 + -2.7 1,124 - -1.6 1,124 - +0.1 1,124 - -0.1 1,124 - +0.3 1,130 + -1.0 1,130 + -0.4 1,131 - -0.0 1,150 + +0.6 1,150 + -0.5 1,150 + -1.4 1,151 - -1.6 1,325 + GFF6564 0.17 +0.3 1,326 - GFF6564 0.17 +0.1 1,340 + GFF6564 0.18 +0.4 1,341 - GFF6564 0.18 -0.2 1,341 - GFF6564 0.18 -1.1 1,341 - GFF6564 0.18 -1.0 1,341 - GFF6564 0.18 -0.9 1,371 + GFF6564 0.19 +0.4 1,402 - GFF6564 0.20 -2.7 1,419 + GFF6564 0.21 -1.5 1,419 + GFF6564 0.21 -1.1 1,420 - GFF6564 0.21 -0.4 1,586 + GFF6564 0.29 -1.6 1,587 - GFF6564 0.29 -0.3 1,823 + GFF6564 0.39 +0.6 1,823 + GFF6564 0.39 +0.5 1,823 + GFF6564 0.39 -1.3 1,824 - GFF6564 0.39 +1.4 1,824 - GFF6564 0.39 -2.4 1,847 + GFF6564 0.40 +1.3 1,848 - GFF6564 0.40 -1.1 1,881 + GFF6564 0.42 -0.8 1,882 - GFF6564 0.42 +0.2 1,934 - GFF6564 0.44 -1.7 2,149 - GFF6564 0.54 +1.9 2,149 - GFF6564 0.54 -0.5 2,149 - GFF6564 0.54 +1.2 2,223 + GFF6564 0.57 -0.9 2,223 + GFF6564 0.57 -0.0 2,223 + GFF6564 0.57 -2.1 2,224 - GFF6564 0.57 +0.9 2,224 - GFF6564 0.57 -0.3 2,243 + GFF6564 0.58 +1.1 2,261 - GFF6564 0.58 -0.5 2,267 + GFF6564 0.59 -1.1 2,289 + GFF6564 0.60 -1.5 2,290 - GFF6564 0.60 -1.5 2,290 - GFF6564 0.60 -0.1 2,290 - GFF6564 0.60 +2.0 2,381 + GFF6564 0.64 -0.5 2,381 + GFF6564 0.64 +2.4 2,382 - GFF6564 0.64 +0.3 2,382 - GFF6564 0.64 +0.2 2,451 + GFF6564 0.67 +0.1 2,452 - GFF6564 0.67 -3.5 2,452 - GFF6564 0.67 -0.1 2,452 - GFF6564 0.67 +0.5 2,580 + GFF6564 0.73 -0.7 2,581 - GFF6564 0.73 -0.9 2,581 - GFF6564 0.73 +0.2 2,745 + GFF6564 0.80 -0.7 2,745 + GFF6564 0.80 -0.0 2,745 + GFF6564 0.80 +1.2 2,745 + GFF6564 0.80 +0.6 2,745 + GFF6564 0.80 -0.2 2,745 + GFF6564 0.80 +1.9 2,745 + GFF6564 0.80 -0.1 2,745 + GFF6564 0.80 -0.1 2,745 + GFF6564 0.80 +0.2 2,746 - GFF6564 0.80 -0.7 2,746 - GFF6564 0.80 -1.7 2,746 - GFF6564 0.80 +0.8 2,746 - GFF6564 0.80 +0.7 2,746 - GFF6564 0.80 +0.9 2,746 - GFF6564 0.80 +0.1 2,746 - GFF6564 0.80 -3.0 2,748 - GFF6564 0.80 -1.4 2,748 - GFF6564 0.80 +0.1 2,748 - GFF6564 0.80 +0.4 2,845 - GFF6564 0.84 +0.6 2,848 + GFF6564 0.84 +1.8 2,849 - GFF6564 0.85 -1.0 2,849 - GFF6564 0.85 +0.9 2,849 - GFF6564 0.85 +2.0 2,849 - GFF6564 0.85 -2.3 2,849 - GFF6564 0.85 +0.3 2,982 + -0.4 2,982 + +1.0 2,983 - +1.4 2,983 - -1.1 3,025 - -1.7 3,063 + +1.4 3,063 + -2.1 3,064 - -0.8 3,064 - +0.4 3,067 + -2.3 3,068 - -0.3 3,102 + -0.5 3,102 + -0.5 3,103 - -1.4 3,103 - -0.5 3,103 - -0.1 3,103 - +0.3 3,103 - -0.5 3,103 - +1.6 3,349 + -0.5 3,350 - +0.9 3,350 - -1.0 3,350 - +0.5 3,350 - +0.3 3,350 - -1.0 3,350 - -1.3 3,377 - -1.0 3,426 + -1.5 3,529 + +0.8 3,529 + +1.4 3,530 - +0.4 3,530 - +0.3 3,530 - -0.5 3,530 - -2.0 3,651 + GFF6565 0.12 -0.3 3,651 + GFF6565 0.12 -0.7 3,651 + GFF6565 0.12 -1.0 3,651 + GFF6565 0.12 +0.2 3,651 + GFF6565 0.12 -1.1 3,651 + GFF6565 0.12 -0.3 3,651 + GFF6565 0.12 -0.1 3,652 - GFF6565 0.12 -0.6 3,652 - GFF6565 0.12 +0.8 3,705 + GFF6565 0.17 -1.5 3,714 + GFF6565 0.17 +0.6 3,714 + GFF6565 0.17 +0.4 3,846 - GFF6565 0.28 +0.2 4,150 - GFF6565 0.52 -2.8 4,150 - GFF6565 0.52 -1.7 4,166 - GFF6565 0.54 -2.0
Or see this region's nucleotide sequence