Strain Fitness in Variovorax sp. SCN45 around GFF6480

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
58,175	+		GFF6479	0.51	+0.4
58,175	+		GFF6479	0.51	-1.0
58,176	-		GFF6479	0.51	-0.6
58,176	-		GFF6479	0.51	-0.4
58,176	-		GFF6479	0.51	-1.5
58,367	+		GFF6479	0.63	+1.2
58,367	+		GFF6479	0.63	-1.0
58,430	+		GFF6479	0.67	-2.2
58,442	+		GFF6479	0.68	-1.5
58,443	-		GFF6479	0.68	-0.9
58,667	+		GFF6479	0.82	-0.9
58,668	-		GFF6479	0.82	-1.9
58,668	-		GFF6479	0.82	-1.8
58,668	-		GFF6479	0.82	-2.2
58,668	-		GFF6479	0.82	+0.0
58,741	+		GFF6479	0.87	+0.2
58,741	+		GFF6479	0.87	-1.9
58,741	+		GFF6479	0.87	-0.8
58,741	+		GFF6479	0.87	-1.2
58,742	-		GFF6479	0.87	+1.3
58,742	-		GFF6479	0.87	+0.4
58,742	-		GFF6479	0.87	+0.6
58,991	+				-0.2
58,991	+				+0.8
58,992	-				-3.2
58,992	-				+0.6
58,992	-				-0.5
59,073	-				-1.2
59,219	+		GFF6480	0.16	+1.7
59,219	+		GFF6480	0.16	-1.0
59,220	-		GFF6480	0.16	-2.2
59,220	-		GFF6480	0.16	-2.6
59,220	-		GFF6480	0.16	+1.0
59,220	-		GFF6480	0.16	-2.6
59,220	-		GFF6480	0.16	-2.2
59,220	-		GFF6480	0.16	-0.1
59,220	-		GFF6480	0.16	-0.5
59,220	-		GFF6480	0.16	+0.5
59,226	-		GFF6480	0.17	-1.0
59,351	+		GFF6480	0.31	+0.8
59,351	+		GFF6480	0.31	+0.9
59,351	+		GFF6480	0.31	+0.6
59,352	-		GFF6480	0.31	-1.4
59,378	+		GFF6480	0.34	+0.8
59,378	+		GFF6480	0.34	-0.8
59,379	-		GFF6480	0.34	-0.2
59,379	-		GFF6480	0.34	+2.7
59,379	-		GFF6480	0.34	+1.5
59,400	-		GFF6480	0.36	+3.2
59,400	-		GFF6480	0.36	-1.2
59,411	+		GFF6480	0.37	-1.5
59,412	-		GFF6480	0.37	+2.3
59,852	+		GFF6480	0.86	+1.6
59,853	-		GFF6480	0.86	-0.5
59,853	-		GFF6480	0.86	-1.0
59,853	-		GFF6480	0.86	+0.3
60,030	+				+0.9
60,030	+				-0.9
60,031	-				+0.5
60,031	-				-1.2
60,031	-				-0.7
60,031	-				-1.0
60,043	+				+0.8
60,043	+				+0.1
60,044	-				-0.3
60,350	+		GFF6481	0.21	-1.9
60,350	+		GFF6481	0.21	-1.9
60,351	-		GFF6481	0.21	-0.4
60,351	-		GFF6481	0.21	+0.0
60,422	+		GFF6481	0.27	-0.8
60,422	+		GFF6481	0.27	+0.2
60,422	+		GFF6481	0.27	+3.8
60,423	-		GFF6481	0.27	+1.3
60,423	-		GFF6481	0.27	+0.4
60,423	-		GFF6481	0.27	-0.7
60,423	-		GFF6481	0.27	-0.2
60,431	+		GFF6481	0.28	-0.8
60,432	-		GFF6481	0.28	-1.7
60,500	+		GFF6481	0.34	+1.3
60,500	+		GFF6481	0.34	+1.8
60,500	+		GFF6481	0.34	-2.4
60,500	+		GFF6481	0.34	-2.1
60,500	+		GFF6481	0.34	+1.5
60,500	+		GFF6481	0.34	+0.0
60,500	+		GFF6481	0.34	+0.3
60,501	-		GFF6481	0.34	-1.5
60,501	-		GFF6481	0.34	+0.0
60,501	-		GFF6481	0.34	-0.6
60,501	-		GFF6481	0.34	-0.2
60,539	+		GFF6481	0.38	-0.8
60,539	+		GFF6481	0.38	-1.4
60,540	-		GFF6481	0.38	-3.2
60,540	-		GFF6481	0.38	+0.2
60,557	+		GFF6481	0.39	+0.4
60,557	+		GFF6481	0.39	+0.3
60,557	+		GFF6481	0.39	-1.7
60,558	-		GFF6481	0.40	-0.5
60,558	-		GFF6481	0.40	-0.4
60,558	-		GFF6481	0.40	+1.0
60,773	+		GFF6481	0.59	+0.6
60,794	+		GFF6481	0.61	+0.7
60,794	+		GFF6481	0.61	+1.1
60,794	+		GFF6481	0.61	-2.7
60,821	+		GFF6481	0.63	-0.5
60,821	+		GFF6481	0.63	-1.5
60,821	+		GFF6481	0.63	+1.6
60,821	+		GFF6481	0.63	-0.2
60,821	+		GFF6481	0.63	-1.3
60,821	+		GFF6481	0.63	+0.1
60,822	-		GFF6481	0.63	-2.3
60,822	-		GFF6481	0.63	-1.1
60,822	-		GFF6481	0.63	+0.7
60,869	+		GFF6481	0.67	+0.2
60,869	+		GFF6481	0.67	-0.8
60,869	+		GFF6481	0.67	-1.2
60,870	-		GFF6481	0.68	+0.2
60,870	-		GFF6481	0.68	-0.1
60,870	-		GFF6481	0.68	+1.1
60,930	-		GFF6481	0.73	-2.1
60,936	-		GFF6481	0.73	+0.8
60,936	-		GFF6481	0.73	-0.3
60,936	-		GFF6481	0.73	-0.4
60,936	-		GFF6481	0.73	-1.2