Strain Fitness in Variovorax sp. SCN45 around GFF6425

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
74	+				+0.4
206	-		GFF6425	0.35	-0.3
445	+		GFF6425	0.83	-2.0
445	+		GFF6425	0.83	-4.1
446	-		GFF6425	0.83	-1.9
592	+				-0.0
592	+				-1.2
663	+				-2.0
663	+				-0.0
752	+				-1.4
752	+				-0.6
948	-				-0.5
1,065	+				-2.1
1,065	+				+0.9
1,065	+				-0.8
1,065	+				-3.3
1,065	+				-1.0
1,065	+				-0.8
1,066	-				-1.7
1,066	-				-1.9
1,209	+		GFF6427	0.24	-0.5
1,237	+		GFF6427	0.27	+0.2
1,237	+		GFF6427	0.27	+0.4
1,237	+		GFF6427	0.27	+1.4
1,237	+		GFF6427	0.27	+0.2
1,238	-		GFF6427	0.27	-0.2
1,238	-		GFF6427	0.27	-1.3
1,238	-		GFF6427	0.27	+2.1
1,277	-		GFF6427	0.31	-1.1
1,278	+		GFF6427	0.31	-1.5
1,278	+		GFF6427	0.31	+0.1
1,279	-		GFF6427	0.32	+0.8
1,279	-		GFF6427	0.32	+1.7
1,395	+		GFF6427	0.44	+0.2
1,395	+		GFF6427	0.44	+0.3
1,395	+		GFF6427	0.44	-0.5
1,396	-		GFF6427	0.44	-0.4
1,482	+		GFF6427	0.53	+2.0
1,482	+		GFF6427	0.53	+1.8
1,482	+		GFF6427	0.53	-1.8
1,483	-		GFF6427	0.53	-0.8
1,483	-		GFF6427	0.53	-1.0
1,483	-		GFF6427	0.53	+0.5
1,483	-		GFF6427	0.53	-2.1