Strain Fitness in Variovorax sp. SCN45 around GFF64

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
79,574	+		GFF63	0.13	+0.1
79,574	+		GFF63	0.13	-1.6
79,575	-		GFF63	0.13	-1.6
79,575	-		GFF63	0.13	+0.2
79,628	+		GFF63	0.18	+0.5
79,628	+		GFF63	0.18	+0.7
79,629	-		GFF63	0.18	-0.3
79,629	-		GFF63	0.18	+2.2
79,629	-		GFF63	0.18	-0.3
79,637	+		GFF63	0.19	-3.2
79,673	+		GFF63	0.22	+1.0
79,673	+		GFF63	0.22	-2.6
79,691	+		GFF63	0.24	-1.5
79,757	+		GFF63	0.30	-1.3
79,757	+		GFF63	0.30	+0.4
79,757	+		GFF63	0.30	-3.3
79,758	-		GFF63	0.30	-0.3
79,758	-		GFF63	0.30	-0.0
79,758	-		GFF63	0.30	+0.2
79,758	-		GFF63	0.30	+0.8
79,758	-		GFF63	0.30	-0.0
79,758	-		GFF63	0.30	-2.0
79,766	+		GFF63	0.31	+1.1
79,776	-		GFF63	0.32	-0.5
80,000	+		GFF63	0.53	-0.8
80,006	+		GFF63	0.53	-1.8
80,006	+		GFF63	0.53	+0.6
80,006	+		GFF63	0.53	-2.0
80,007	-		GFF63	0.53	-1.7
80,007	-		GFF63	0.53	-1.3
80,202	-		GFF63	0.71	+0.9
80,202	-		GFF63	0.71	-0.9
80,369	+		GFF63	0.87	-1.0
80,369	+		GFF63	0.87	-1.0
80,370	-		GFF63	0.87	+2.5
80,384	+		GFF63	0.88	-0.2
80,462	+				-2.2
80,463	-				-1.5
80,463	-				+0.6
80,642	-		GFF64	0.14	+0.2
80,642	-		GFF64	0.14	+3.3
80,642	-		GFF64	0.14	-0.4
80,765	-		GFF64	0.27	+1.4
80,765	-		GFF64	0.27	-3.0
80,887	+		GFF64	0.40	-1.5
80,888	-		GFF64	0.40	-1.0
80,888	-		GFF64	0.40	-2.8
81,058	+		GFF64	0.58	+0.4
81,058	+		GFF64	0.58	-3.8
81,058	+		GFF64	0.58	+1.1
81,058	+		GFF64	0.58	-0.3
81,058	+		GFF64	0.58	-0.8
81,059	-		GFF64	0.58	-0.5
81,059	-		GFF64	0.58	+1.5
81,214	+		GFF64	0.74	-1.3
81,214	+		GFF64	0.74	-1.3
81,214	+		GFF64	0.74	-0.6
81,215	-		GFF64	0.74	-1.8
81,215	-		GFF64	0.74	-0.7
81,215	-		GFF64	0.74	-0.7
81,477	+				-0.5
81,477	+				-1.8
81,477	+				+0.5
81,477	+				-0.9
81,477	+				+0.8
81,477	+				+1.7
81,477	+				-0.0
81,477	+				-1.5
81,478	-				-0.7
81,478	-				+0.9
81,478	-				-1.8
81,478	-				+0.8
81,478	-				-0.0
81,481	+				-0.2
81,482	-				+1.5
81,482	-				-1.3
81,506	+				-0.4
81,630	+		GFF65	0.14	-1.2
81,652	-		GFF65	0.16	-1.0
81,652	-		GFF65	0.16	+0.8
81,652	-		GFF65	0.16	-1.5
81,706	-		GFF65	0.22	+2.5
81,706	-		GFF65	0.22	+0.4
81,723	+		GFF65	0.24	-0.0
81,723	+		GFF65	0.24	-0.8
81,724	-		GFF65	0.24	-1.5
81,724	-		GFF65	0.24	-0.0
81,724	-		GFF65	0.24	+0.1
81,724	-		GFF65	0.24	+2.0
81,843	+		GFF65	0.37	+0.2
81,843	+		GFF65	0.37	+0.1
81,844	-		GFF65	0.37	+3.5
81,844	-		GFF65	0.37	-1.0
81,844	-		GFF65	0.37	-0.1
81,844	-		GFF65	0.37	+0.6
81,844	-		GFF65	0.37	-0.4
81,948	+		GFF65	0.48	-0.2
81,948	+		GFF65	0.48	+2.5
81,948	+		GFF65	0.48	-0.1
81,948	+		GFF65	0.48	-1.9
81,948	+		GFF65	0.48	+0.2
81,949	-		GFF65	0.48	+0.8
81,949	-		GFF65	0.48	-0.7
81,949	-		GFF65	0.48	+1.8
82,044	+		GFF65	0.58	-0.8
82,045	-		GFF65	0.58	+1.3
82,323	+		GFF65	0.88	+0.4
82,323	+		GFF65	0.88	-0.0
82,324	-		GFF65	0.88	+0.2
82,431	+				-3.4