Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF631 and GFF632 are separated by 24 nucleotides GFF632 and GFF633 are separated by 1 nucleotides GFF633 and GFF634 are separated by 21 nucleotides
GFF631 - Formamidase (EC 3.5.1.49), at 680,271 to 681,503
GFF631
GFF632 - Urea ABC transporter, ATPase protein UrtE, at 681,528 to 682,229
GFF632
GFF633 - Urea ABC transporter, ATPase protein UrtD, at 682,231 to 682,974
GFF633
GFF634 - Urea ABC transporter, permease protein UrtC, at 682,996 to 684,186
GFF634
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1
2
3 at 680.599 kb on + strand, within GFF631 at 680.599 kb on + strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.647 kb on + strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.785 kb on + strand, within GFF631 at 680.785 kb on + strand, within GFF631 at 681.541 kb on + strand at 681.979 kb on + strand, within GFF632 at 681.979 kb on + strand, within GFF632 at 682.678 kb on + strand, within GFF633 at 682.679 kb on - strand, within GFF633
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 680,599 + GFF631 0.27 -0.1 680,599 + GFF631 0.27 +0.9 680,600 - GFF631 0.27 +1.2 680,600 - GFF631 0.27 -1.1 680,600 - GFF631 0.27 +0.3 680,647 + GFF631 0.30 -1.1 680,648 - GFF631 0.31 +1.2 680,648 - GFF631 0.31 +0.7 680,785 + GFF631 0.42 +0.3 680,785 + GFF631 0.42 +3.4 681,541 + -0.9 681,979 + GFF632 0.64 -1.7 681,979 + GFF632 0.64 -0.4 682,678 + GFF633 0.60 -0.1 682,679 - GFF633 0.60 -1.7
Or see this region's nucleotide sequence