Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6304 and GFF6305 are separated by 205 nucleotides GFF6305 and GFF6306 are separated by 138 nucleotides
GFF6304 - Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57), at 93,135 to 94,112
GFF6304
GFF6305 - Malate synthase G (EC 2.3.3.9), at 94,318 to 96,492
GFF6305
GFF6306 - Uncharacterized MFS-type transporter, at 96,631 to 97,950
GFF6306
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.379 kb on + strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.380 kb on - strand, within GFF6304 at 93.505 kb on + strand, within GFF6304 at 93.506 kb on - strand, within GFF6304 at 93.598 kb on + strand, within GFF6304 at 93.599 kb on - strand, within GFF6304 at 93.599 kb on - strand, within GFF6304 at 93.619 kb on + strand, within GFF6304 at 93.619 kb on + strand, within GFF6304 at 93.619 kb on + strand, within GFF6304 at 93.619 kb on + strand, within GFF6304 at 93.619 kb on + strand, within GFF6304 at 93.620 kb on - strand, within GFF6304 at 93.620 kb on - strand, within GFF6304 at 93.620 kb on - strand, within GFF6304 at 93.620 kb on - strand, within GFF6304 at 93.628 kb on + strand, within GFF6304 at 93.628 kb on + strand, within GFF6304 at 93.628 kb on + strand, within GFF6304 at 93.628 kb on + strand, within GFF6304 at 93.629 kb on - strand, within GFF6304 at 93.629 kb on - strand, within GFF6304 at 93.629 kb on - strand, within GFF6304 at 93.629 kb on - strand, within GFF6304 at 93.629 kb on - strand, within GFF6304 at 93.793 kb on + strand, within GFF6304 at 93.793 kb on + strand, within GFF6304 at 93.794 kb on - strand, within GFF6304 at 93.794 kb on - strand, within GFF6304 at 93.850 kb on + strand, within GFF6304 at 93.851 kb on - strand, within GFF6304 at 93.851 kb on - strand, within GFF6304 at 93.865 kb on + strand, within GFF6304 at 93.874 kb on + strand, within GFF6304 at 93.875 kb on - strand, within GFF6304 at 93.875 kb on - strand, within GFF6304 at 93.875 kb on - strand, within GFF6304 at 93.875 kb on - strand, within GFF6304 at 94.021 kb on + strand at 94.021 kb on + strand at 94.021 kb on + strand at 94.021 kb on + strand at 94.021 kb on + strand at 94.022 kb on - strand at 94.022 kb on - strand at 94.145 kb on + strand at 94.145 kb on + strand at 94.145 kb on + strand at 94.146 kb on - strand at 94.158 kb on - strand at 94.169 kb on + strand at 94.169 kb on + strand at 94.169 kb on + strand at 94.169 kb on + strand at 94.169 kb on + strand at 94.169 kb on + strand at 94.170 kb on - strand at 94.170 kb on - strand at 94.170 kb on - strand at 94.170 kb on - strand at 94.170 kb on - strand at 94.170 kb on - strand at 94.179 kb on + strand at 94.179 kb on + strand at 94.179 kb on + strand at 94.179 kb on + strand at 94.179 kb on + strand at 94.180 kb on - strand at 94.180 kb on - strand at 94.180 kb on - strand at 94.180 kb on - strand at 94.180 kb on - strand at 94.212 kb on + strand at 94.212 kb on + strand at 94.212 kb on + strand at 94.234 kb on - strand at 94.234 kb on - strand at 94.253 kb on + strand at 94.275 kb on + strand at 94.558 kb on + strand, within GFF6305 at 94.585 kb on + strand, within GFF6305 at 94.585 kb on + strand, within GFF6305 at 94.586 kb on - strand, within GFF6305 at 94.586 kb on - strand, within GFF6305 at 94.693 kb on + strand, within GFF6305 at 94.693 kb on + strand, within GFF6305 at 94.693 kb on + strand, within GFF6305 at 94.732 kb on + strand, within GFF6305 at 94.732 kb on + strand, within GFF6305 at 94.732 kb on + strand, within GFF6305 at 94.733 kb on - strand, within GFF6305 at 94.733 kb on - strand, within GFF6305 at 94.744 kb on + strand, within GFF6305 at 94.744 kb on + strand, within GFF6305 at 94.745 kb on - strand, within GFF6305 at 94.745 kb on - strand, within GFF6305 at 94.745 kb on - strand, within GFF6305 at 94.745 kb on - strand, within GFF6305 at 94.795 kb on + strand, within GFF6305 at 94.795 kb on + strand, within GFF6305 at 94.795 kb on + strand, within GFF6305 at 94.795 kb on + strand, within GFF6305 at 94.795 kb on + strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.796 kb on - strand, within GFF6305 at 94.975 kb on + strand, within GFF6305 at 95.179 kb on + strand, within GFF6305 at 95.179 kb on + strand, within GFF6305 at 95.180 kb on - strand, within GFF6305 at 95.180 kb on - strand, within GFF6305 at 95.275 kb on + strand, within GFF6305 at 95.275 kb on + strand, within GFF6305 at 95.275 kb on + strand, within GFF6305 at 95.275 kb on + strand, within GFF6305 at 95.275 kb on + strand, within GFF6305 at 95.276 kb on - strand, within GFF6305 at 95.276 kb on - strand, within GFF6305 at 95.371 kb on + strand, within GFF6305 at 95.371 kb on + strand, within GFF6305 at 95.371 kb on + strand, within GFF6305 at 95.372 kb on - strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.479 kb on + strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.480 kb on - strand, within GFF6305 at 95.773 kb on + strand, within GFF6305 at 95.773 kb on + strand, within GFF6305 at 95.774 kb on - strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.962 kb on + strand, within GFF6305 at 95.963 kb on - strand, within GFF6305 at 95.963 kb on - strand, within GFF6305 at 95.963 kb on - strand, within GFF6305 at 95.963 kb on - strand, within GFF6305 at 96.136 kb on + strand, within GFF6305 at 96.136 kb on + strand, within GFF6305 at 96.136 kb on + strand, within GFF6305 at 96.137 kb on - strand, within GFF6305 at 96.137 kb on - strand, within GFF6305 at 96.137 kb on - strand, within GFF6305 at 96.349 kb on + strand at 96.349 kb on + strand at 96.349 kb on + strand at 96.350 kb on - strand at 96.350 kb on - strand at 96.350 kb on - strand at 96.388 kb on + strand at 96.388 kb on + strand at 96.388 kb on + strand at 96.388 kb on + strand at 96.388 kb on + strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.389 kb on - strand at 96.440 kb on - strand at 96.440 kb on - strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.590 kb on + strand at 96.591 kb on - strand at 96.591 kb on - strand at 96.591 kb on - strand at 96.591 kb on - strand at 96.591 kb on - strand at 97.201 kb on + strand, within GFF6306 at 97.202 kb on - strand, within GFF6306 at 97.202 kb on - strand, within GFF6306 at 97.402 kb on + strand, within GFF6306
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 93,379 + GFF6304 0.25 +0.2 93,379 + GFF6304 0.25 -1.9 93,379 + GFF6304 0.25 +0.6 93,379 + GFF6304 0.25 -0.2 93,379 + GFF6304 0.25 -2.4 93,379 + GFF6304 0.25 +1.7 93,379 + GFF6304 0.25 +0.6 93,379 + GFF6304 0.25 -2.9 93,379 + GFF6304 0.25 -0.1 93,379 + GFF6304 0.25 -1.1 93,379 + GFF6304 0.25 +0.5 93,380 - GFF6304 0.25 -0.2 93,380 - GFF6304 0.25 +0.0 93,380 - GFF6304 0.25 +1.1 93,380 - GFF6304 0.25 -0.6 93,380 - GFF6304 0.25 +1.3 93,380 - GFF6304 0.25 +0.2 93,380 - GFF6304 0.25 -0.2 93,380 - GFF6304 0.25 -0.3 93,380 - GFF6304 0.25 -1.2 93,505 + GFF6304 0.38 -2.3 93,506 - GFF6304 0.38 -2.5 93,598 + GFF6304 0.47 -2.4 93,599 - GFF6304 0.47 -0.8 93,599 - GFF6304 0.47 -0.8 93,619 + GFF6304 0.49 -1.1 93,619 + GFF6304 0.49 +1.4 93,619 + GFF6304 0.49 -0.4 93,619 + GFF6304 0.49 +0.1 93,619 + GFF6304 0.49 +4.5 93,620 - GFF6304 0.50 -0.2 93,620 - GFF6304 0.50 +0.2 93,620 - GFF6304 0.50 -1.5 93,620 - GFF6304 0.50 +0.5 93,628 + GFF6304 0.50 +1.3 93,628 + GFF6304 0.50 +0.6 93,628 + GFF6304 0.50 -1.2 93,628 + GFF6304 0.50 +0.2 93,629 - GFF6304 0.51 -2.1 93,629 - GFF6304 0.51 -0.0 93,629 - GFF6304 0.51 -0.2 93,629 - GFF6304 0.51 +0.9 93,629 - GFF6304 0.51 -0.6 93,793 + GFF6304 0.67 +0.8 93,793 + GFF6304 0.67 -2.2 93,794 - GFF6304 0.67 +1.2 93,794 - GFF6304 0.67 +1.3 93,850 + GFF6304 0.73 -0.7 93,851 - GFF6304 0.73 -0.4 93,851 - GFF6304 0.73 -0.5 93,865 + GFF6304 0.75 -2.0 93,874 + GFF6304 0.76 -1.3 93,875 - GFF6304 0.76 -1.0 93,875 - GFF6304 0.76 +0.9 93,875 - GFF6304 0.76 +0.5 93,875 - GFF6304 0.76 -0.9 94,021 + +0.3 94,021 + -0.8 94,021 + -2.1 94,021 + -0.8 94,021 + +0.6 94,022 - -1.5 94,022 - +0.1 94,145 + +1.3 94,145 + -0.4 94,145 + -0.4 94,146 - -1.1 94,158 - -1.6 94,169 + +0.6 94,169 + +0.4 94,169 + +0.2 94,169 + -1.5 94,169 + +0.4 94,169 + +0.2 94,170 - +0.6 94,170 - -2.5 94,170 - +0.5 94,170 - +1.1 94,170 - -0.7 94,170 - -0.6 94,179 + +0.0 94,179 + +2.6 94,179 + -0.4 94,179 + +1.1 94,179 + -0.9 94,180 - -0.7 94,180 - +1.9 94,180 - -0.8 94,180 - +0.9 94,180 - +0.8 94,212 + -0.4 94,212 + -1.9 94,212 + +0.4 94,234 - -0.1 94,234 - -3.5 94,253 + -1.9 94,275 + -2.1 94,558 + GFF6305 0.11 +0.9 94,585 + GFF6305 0.12 -2.9 94,585 + GFF6305 0.12 -0.1 94,586 - GFF6305 0.12 -3.3 94,586 - GFF6305 0.12 -0.8 94,693 + GFF6305 0.17 -1.7 94,693 + GFF6305 0.17 -0.6 94,693 + GFF6305 0.17 -1.3 94,732 + GFF6305 0.19 -2.8 94,732 + GFF6305 0.19 -1.6 94,732 + GFF6305 0.19 -1.6 94,733 - GFF6305 0.19 -2.7 94,733 - GFF6305 0.19 -0.8 94,744 + GFF6305 0.20 -3.0 94,744 + GFF6305 0.20 -0.1 94,745 - GFF6305 0.20 -0.1 94,745 - GFF6305 0.20 -1.9 94,745 - GFF6305 0.20 -1.9 94,745 - GFF6305 0.20 -0.5 94,795 + GFF6305 0.22 -3.0 94,795 + GFF6305 0.22 -0.7 94,795 + GFF6305 0.22 -1.5 94,795 + GFF6305 0.22 -2.4 94,795 + GFF6305 0.22 -4.9 94,796 - GFF6305 0.22 -1.4 94,796 - GFF6305 0.22 -2.2 94,796 - GFF6305 0.22 -2.0 94,796 - GFF6305 0.22 -2.9 94,796 - GFF6305 0.22 -1.6 94,796 - GFF6305 0.22 -1.5 94,796 - GFF6305 0.22 -1.7 94,796 - GFF6305 0.22 -2.3 94,796 - GFF6305 0.22 -2.5 94,796 - GFF6305 0.22 -1.8 94,796 - GFF6305 0.22 -2.8 94,796 - GFF6305 0.22 -4.0 94,796 - GFF6305 0.22 -2.4 94,796 - GFF6305 0.22 -0.9 94,796 - GFF6305 0.22 -2.9 94,975 + GFF6305 0.30 -2.2 95,179 + GFF6305 0.40 -1.9 95,179 + GFF6305 0.40 -3.4 95,180 - GFF6305 0.40 -1.9 95,180 - GFF6305 0.40 -2.2 95,275 + GFF6305 0.44 -1.8 95,275 + GFF6305 0.44 -1.6 95,275 + GFF6305 0.44 -1.2 95,275 + GFF6305 0.44 -2.1 95,275 + GFF6305 0.44 -2.6 95,276 - GFF6305 0.44 -4.2 95,276 - GFF6305 0.44 -3.0 95,371 + GFF6305 0.48 -3.8 95,371 + GFF6305 0.48 -0.4 95,371 + GFF6305 0.48 -1.4 95,372 - GFF6305 0.48 -1.4 95,479 + GFF6305 0.53 -0.9 95,479 + GFF6305 0.53 +0.2 95,479 + GFF6305 0.53 +0.2 95,479 + GFF6305 0.53 -0.8 95,479 + GFF6305 0.53 -1.8 95,479 + GFF6305 0.53 -0.8 95,479 + GFF6305 0.53 -3.6 95,479 + GFF6305 0.53 -2.4 95,479 + GFF6305 0.53 -2.2 95,479 + GFF6305 0.53 -2.3 95,479 + GFF6305 0.53 -0.9 95,479 + GFF6305 0.53 -2.4 95,479 + GFF6305 0.53 -2.7 95,479 + GFF6305 0.53 -0.6 95,479 + GFF6305 0.53 -3.2 95,479 + GFF6305 0.53 +1.2 95,479 + GFF6305 0.53 -3.1 95,479 + GFF6305 0.53 -4.4 95,479 + GFF6305 0.53 -2.8 95,479 + GFF6305 0.53 +1.0 95,480 - GFF6305 0.53 +0.6 95,480 - GFF6305 0.53 -0.4 95,480 - GFF6305 0.53 -2.8 95,480 - GFF6305 0.53 -2.3 95,480 - GFF6305 0.53 -1.2 95,480 - GFF6305 0.53 -3.2 95,480 - GFF6305 0.53 -2.2 95,480 - GFF6305 0.53 -2.4 95,480 - GFF6305 0.53 -4.1 95,480 - GFF6305 0.53 -0.1 95,480 - GFF6305 0.53 -2.2 95,480 - GFF6305 0.53 -1.4 95,480 - GFF6305 0.53 -1.5 95,480 - GFF6305 0.53 -1.1 95,480 - GFF6305 0.53 -1.7 95,480 - GFF6305 0.53 -1.6 95,773 + GFF6305 0.67 +1.2 95,773 + GFF6305 0.67 -0.6 95,774 - GFF6305 0.67 -3.6 95,962 + GFF6305 0.76 -1.6 95,962 + GFF6305 0.76 -2.4 95,962 + GFF6305 0.76 -2.2 95,962 + GFF6305 0.76 +0.2 95,962 + GFF6305 0.76 -0.8 95,962 + GFF6305 0.76 -1.7 95,962 + GFF6305 0.76 -1.7 95,962 + GFF6305 0.76 -2.3 95,963 - GFF6305 0.76 -1.9 95,963 - GFF6305 0.76 -2.1 95,963 - GFF6305 0.76 -1.4 95,963 - GFF6305 0.76 -3.2 96,136 + GFF6305 0.84 -3.0 96,136 + GFF6305 0.84 -1.4 96,136 + GFF6305 0.84 -1.8 96,137 - GFF6305 0.84 -0.4 96,137 - GFF6305 0.84 +0.8 96,137 - GFF6305 0.84 -0.1 96,349 + -4.2 96,349 + -1.9 96,349 + -3.3 96,350 - -2.4 96,350 - -0.8 96,350 - -1.4 96,388 + -3.0 96,388 + -2.2 96,388 + -2.2 96,388 + -0.4 96,388 + +1.2 96,389 - -1.5 96,389 - -1.1 96,389 - -1.2 96,389 - -0.5 96,389 - -0.2 96,389 - -1.4 96,389 - -2.7 96,389 - -1.5 96,389 - -2.2 96,440 - -2.3 96,440 - -5.2 96,590 + -1.2 96,590 + +2.2 96,590 + -1.5 96,590 + +0.9 96,590 + +0.7 96,590 + -0.1 96,590 + +0.2 96,590 + +3.5 96,590 + -1.6 96,591 - +1.0 96,591 - -1.9 96,591 - +2.3 96,591 - -1.8 96,591 - -1.8 97,201 + GFF6306 0.43 -2.0 97,202 - GFF6306 0.43 +0.8 97,202 - GFF6306 0.43 +0.0 97,402 + GFF6306 0.58 -0.4
Or see this region's nucleotide sequence