Strain Fitness in Variovorax sp. SCN45 around GFF6208

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
114,337	-		GFF6206	0.75	-2.0
114,545	+				+1.3
114,545	+				+0.1
114,890	+		GFF6207	0.47	+0.6
114,891	-		GFF6207	0.47	-2.1
114,891	-		GFF6207	0.47	+2.3
115,344	+				-0.7
115,383	+				+0.0
115,383	+				+1.0
115,383	+				+1.9
115,384	-				+0.5
115,384	-				+0.7
115,384	-				-1.7
115,384	-				-0.1
115,473	+		GFF6208	0.11	+0.6
115,491	+		GFF6208	0.12	-1.2
115,492	-		GFF6208	0.12	-0.7
115,492	-		GFF6208	0.12	-0.6
115,515	+		GFF6208	0.14	+0.2
115,515	+		GFF6208	0.14	+1.4
115,515	+		GFF6208	0.14	-0.7
115,516	-		GFF6208	0.14	+0.4
115,554	+		GFF6208	0.16	+0.9
115,557	+		GFF6208	0.16	-1.3
115,557	+		GFF6208	0.16	-1.6
115,558	-		GFF6208	0.16	-0.2
115,558	-		GFF6208	0.16	-1.3
115,641	+		GFF6208	0.22	-1.0
115,641	+		GFF6208	0.22	-0.7
116,025	+		GFF6208	0.48	-1.7
116,025	+		GFF6208	0.48	-1.4
116,025	+		GFF6208	0.48	+0.9
116,025	+		GFF6208	0.48	+0.2
116,026	-		GFF6208	0.48	-0.3
116,026	-		GFF6208	0.48	+0.8
116,166	+		GFF6208	0.57	+0.2
116,166	+		GFF6208	0.57	-1.4
116,373	+		GFF6208	0.71	+2.7
116,374	-		GFF6208	0.71	+1.4
116,374	-		GFF6208	0.71	-0.2
116,607	+		GFF6208	0.87	-1.6
116,607	+		GFF6208	0.87	-0.8
116,608	-		GFF6208	0.87	-0.3
116,655	+		GFF6208	0.90	+3.9
116,655	+		GFF6208	0.90	+1.1
116,655	+		GFF6208	0.90	-0.8
116,655	+		GFF6208	0.90	-2.2
116,656	-		GFF6208	0.90	-1.1
116,656	-		GFF6208	0.90	+0.3
116,656	-		GFF6208	0.90	-0.7
116,656	-		GFF6208	0.90	-1.7
116,716	-				+0.4
116,932	+				+3.8
116,932	+				+2.7
116,933	-				-1.5
116,933	-				+0.7
116,933	-				-0.7
116,933	-				-1.6
116,934	+				-1.7
116,934	+				-1.1
116,935	-				+2.4
116,940	+				+0.7
116,941	-				+0.3
116,941	-				+1.4
117,241	+		GFF6209	0.33	-0.1
117,241	+		GFF6209	0.33	-0.1
117,242	-		GFF6209	0.33	+0.2
117,242	-		GFF6209	0.33	-0.1
117,368	+		GFF6209	0.50	+0.6